Class/Object

org.bdgenomics.adam.sql

VariantCallingAnnotations

Related Docs: object VariantCallingAnnotations | package sql

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case class VariantCallingAnnotations(filtersApplied: Option[Boolean] = None, filtersPassed: Option[Boolean] = None, filtersFailed: Seq[String] = Seq(), downsampled: Option[Boolean] = None, baseQRankSum: Option[Float] = None, fisherStrandBiasPValue: Option[Float] = None, rmsMapQ: Option[Float] = None, mapq0Reads: Option[Int] = None, mqRankSum: Option[Float] = None, readPositionRankSum: Option[Float] = None, genotypePriors: Seq[Float] = Seq(), genotypePosteriors: Seq[Float] = Seq(), vqslod: Option[Float] = None, culprit: Option[String] = None, attributes: Map[String, String] = Map()) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. VariantCallingAnnotations
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
  1. Public
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Instance Constructors

  1. new VariantCallingAnnotations(filtersApplied: Option[Boolean] = None, filtersPassed: Option[Boolean] = None, filtersFailed: Seq[String] = Seq(), downsampled: Option[Boolean] = None, baseQRankSum: Option[Float] = None, fisherStrandBiasPValue: Option[Float] = None, rmsMapQ: Option[Float] = None, mapq0Reads: Option[Int] = None, mqRankSum: Option[Float] = None, readPositionRankSum: Option[Float] = None, genotypePriors: Seq[Float] = Seq(), genotypePosteriors: Seq[Float] = Seq(), vqslod: Option[Float] = None, culprit: Option[String] = None, attributes: Map[String, String] = Map())

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. val attributes: Map[String, String]

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  6. val baseQRankSum: Option[Float]

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  7. def canEqual(that: Any): Boolean

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    Definition Classes
    VariantCallingAnnotations → Equals

  8. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. val culprit: Option[String]

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  10. val downsampled: Option[Boolean]

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  11. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  12. val filtersApplied: Option[Boolean]

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  13. val filtersFailed: Seq[String]

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  14. val filtersPassed: Option[Boolean]

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  15. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  16. val fisherStrandBiasPValue: Option[Float]

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  17. val genotypePosteriors: Seq[Float]

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  18. val genotypePriors: Seq[Float]

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  19. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  20. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  21. val mapq0Reads: Option[Int]

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  22. val mqRankSum: Option[Float]

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  23. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  24. final def notify(): Unit

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    Definition Classes
    AnyRef

  25. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  26. def productArity: Int

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    Definition Classes
    VariantCallingAnnotations → Product

  27. def productElement(i: Int): Any

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    Definition Classes
    VariantCallingAnnotations → Product

  28. val readPositionRankSum: Option[Float]

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  29. val rmsMapQ: Option[Float]

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  30. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  31. def toAvro: formats.avro.VariantCallingAnnotations

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  32. val vqslod: Option[Float]

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  33. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  34. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  35. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped