Alignment headers.
Feature headers.
Genotype headers.
Print attribute values for the specified alignments.
Print attribute values for the specified alignments.
Sequence of alignments.
Sequence of attribute keys.
Print attribute values for alignments in the specified AlignmentDataset up to the limit.
Print attribute values for alignments in the specified AlignmentDataset up to the limit.
AlignmentDataset.
Sequence of attribute keys. Defaults to empty.
Number of alignments to print attribute values for. Defaults to 10.
Print attribute values for the specified features.
Print attribute values for the specified features.
Sequence of features.
Sequence of attribute keys.
Print attribute values for features in the specified FeatureDataset up to the limit.
Print attribute values for features in the specified FeatureDataset up to the limit.
FeatureDataset.
Sequence of attribute keys. Defaults to empty.
Number of features to print attribute values for. Defaults to 10.
Print VCF FORMAT field attributes for the specified genotypes.
Print VCF FORMAT field attributes for the specified genotypes.
Sequence of genotypes.
Sequence of VCF FORMAT field attribute keys.
Sequence of VCF header lines.
Print VCF FORMAT field attributes for genotypes in the specified GenotypeDataset up to the limit.
Print VCF FORMAT field attributes for genotypes in the specified GenotypeDataset up to the limit.
GenotypeDataset.
Sequence of VCF FORMAT field attribute keys. Defaults to empty.
Number of genotypes to print VCF FORMAT field attribute values for. Defaults to 10.
Print genotype filter values for the specified genotypes.
Print genotype filter values for the specified genotypes.
Sequence of genotypes.
Sequence of VCF header lines.
Print genotype filter values for genotypes in the specified GenotypeDataset up to the limit.
Print genotype filter values for genotypes in the specified GenotypeDataset up to the limit.
GenotypeDataset.
Number of genotypes to print genotype filter values for. Defaults to 10.
Print VCF INFO field attributes for the specified variants.
Print VCF INFO field attributes for the specified variants.
Sequence of variants.
Sequence of VCF INFO field attribute keys. Defaults to empty.
Sequence of VCF header lines.
Print VCF INFO field attributes for variants in the specified VariantDataset up to the limit.
Print VCF INFO field attributes for variants in the specified VariantDataset up to the limit.
VariantDataset.
Sequence of VCF INFO field attribute keys. Defaults to empty.
Number of variants to print VCF INFO field attribute values for. Defaults to 10.
Print attribute values for the specified reads.
Print attribute values for the specified reads.
Sequence of reads.
Sequence of attribute keys.
Print attribute values for reads in the specified ReadDataset up to the limit.
Print attribute values for reads in the specified ReadDataset up to the limit.
ReadDataset.
Sequence of attribute keys. Defaults to empty.
Number of reads to print attribute values for. Defaults to 10.
Print attribute values for the specified samples.
Print attribute values for the specified samples.
Sequence of samples.
Sequence of attribute keys. Defaults to empty.
Print attribute values for the specified sequences.
Print attribute values for the specified sequences.
Sequence of sequences.
Sequence of attribute keys.
Print attribute values for sequences in the specified SequenceDataset up to the limit.
Print attribute values for sequences in the specified SequenceDataset up to the limit.
SequenceDataset.
Sequence of attribute keys. Defaults to empty.
Number of sequences to print attribute values for. Defaults to 10.
Print attribute values for the specified slices.
Print attribute values for the specified slices.
Sequence of slices.
Sequence of attribute keys.
Print attribute values for slices in the specified SliceDataset up to the limit.
Print attribute values for slices in the specified SliceDataset up to the limit.
SliceDataset.
Sequence of attribute keys. Defaults to empty.
Number of slices to print attribute values for. Defaults to 10.
Print filter values for the specified variants.
Print filter values for the specified variants.
Sequence of variants to print filter values for.
Sequence of VCF header lines.
Print filter values for variants in the specified VariantDataset up to the limit.
Print filter values for variants in the specified VariantDataset up to the limit.
VariantDataset.
Number of variants to print filter values for. Defaults to 10.
Read headers.
Sequence headers.
Slice headers.
Variant headers.
Utility methods for use in adam-shell.