FileExtensions

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

2. final def ##(): Int

   

   Definition Classes

   AnyRef → Any

3. final def ==(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

4. final def asInstanceOf[T0]: T0

   

   Definition Classes

   Any

5. def clone(): AnyRef

   

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

6. final def eq(arg0: AnyRef): Boolean

   

   Definition Classes

   AnyRef

7. def equals(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

8. def finalize(): Unit

   

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( classOf[java.lang.Throwable] )

9. final def getClass(): Class[_]

   

   Definition Classes

   AnyRef → Any

10. def hashCode(): Int

    

    Definition Classes

    AnyRef → Any

11. def is2BitExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches a 2bit format file extension.

12. def isBamExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches a BAM/CRAM/SAM format file extension.

13. def isBedExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches a BED6/12 format file extension.

14. def isDictExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches an HTSJDK sequence dictionary (.dict) extension.

15. def isFastaExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches a FASTA format file extension.

16. def isFastqExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches a FASTQ format file extension.

17. def isGenomeExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches a Bedtools genome file (.genome) extension.

18. def isGff3Ext(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches a GFF3 format file extension.

19. def isGtfExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches a GFF2/GTF format file extension.

20. def isGzip(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches a GZIP format file extension.

21. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

22. def isInterleavedFastqExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches an interleaved FASTQ format file extension.

23. def isIntervalListExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches an IntervalList format file extension.

24. def isNarrowPeakExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches a NarrowPeak format file extension.

25. def isTextExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches a text file (.txt) extension.

26. def isVcfExt(pathName: String): Boolean

    
    pathName

    The path name to match.

    returns

    Returns true if the path name matches a VCF format file extension.

27. final def ne(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

28. final def notify(): Unit

    

    Definition Classes

    AnyRef

29. final def notifyAll(): Unit

    

    Definition Classes

    AnyRef

30. final def synchronized[T0](arg0: ⇒ T0): T0

    

    Definition Classes

    AnyRef

31. def toString(): String

    

    Definition Classes

    AnyRef → Any

32. final def wait(): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

33. final def wait(arg0: Long, arg1: Int): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

34. final def wait(arg0: Long): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )