Packages

class InterleavedFASTQInFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Logging

Linear Supertypes
Logging, InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter], Serializable, Serializable, AnyRef, Any
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Inherited
  1. InterleavedFASTQInFormatter
  2. Logging
  3. InFormatter
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  6. val companion: InterleavedFASTQInFormatter.type
    Attributes
    protected
    Definition Classes
    InterleavedFASTQInFormatterInFormatter
  7. def debug(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  8. def debug(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  9. def debug(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  10. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  11. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  12. def error(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  13. def error(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  14. def error(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  15. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  16. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  17. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  18. def info(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  19. def info(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  20. def info(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  21. def isDebugEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  22. def isErrorEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  23. def isInfoEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  24. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  25. def isTraceEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  26. def isWarnEnabled: Boolean
    Attributes
    protected
    Definition Classes
    Logging
  27. def logger: Logger
    Attributes
    protected
    Definition Classes
    Logging
  28. def loggerName: String
    Attributes
    protected
    Definition Classes
    Logging
  29. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  30. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  31. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  32. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  33. def toString(): String
    Definition Classes
    AnyRef → Any
  34. def trace(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  35. def trace(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  36. def trace(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  37. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  38. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  39. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  40. def warn(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  41. def warn(msg: ⇒ Any, t: ⇒ Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  42. def warn(msg: ⇒ Any): Unit
    Attributes
    protected
    Definition Classes
    Logging
  43. def write(os: OutputStream, iter: Iterator[Fragment]): Unit

    Writes alignments to an output stream in interleaved FASTQ format.

    Writes alignments to an output stream in interleaved FASTQ format.

    os

    An OutputStream connected to a process we are piping to.

    iter

    An iterator of records to write.

    Definition Classes
    InterleavedFASTQInFormatterInFormatter

Inherited from Logging

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped