Packages

package fragment

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Visibility
  1. Public
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Type Members

  1. case class DatasetBoundFragmentDataset extends FragmentDataset with DatasetBoundGenomicDataset[Fragment, Fragment, FragmentDataset] with Product with Serializable
  2. sealed abstract class FragmentDataset extends AvroReadGroupGenomicDataset[Fragment, Fragment, FragmentDataset]
  3. class InterleavedFASTQInFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Logging
  4. case class ParquetUnboundFragmentDataset extends FragmentDataset with Product with Serializable
  5. case class RDDBoundFragmentDataset extends FragmentDataset with Product with Serializable
  6. class Tab5InFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, Tab5InFormatter] with Logging
  7. class Tab6InFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, Tab6InFormatter] with Logging

Value Members

  1. object FragmentDataset

    Helper singleton object for building FragmentDatasets.

  2. object InterleavedFASTQInFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Serializable

    InFormatter companion that creates an InFormatter that writes interleaved FASTQ.

  3. object Tab5InFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, Tab5InFormatter] with Serializable

    InFormatter companion that creates an InFormatter that writes Bowtie tab5 format.

  4. object Tab6InFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, Tab6InFormatter] with Serializable

    InFormatter companion that creates an InFormatter that writes Bowtie tab6 format.

Ungrouped