package fragment
Ordering
- Alphabetic
Visibility
- Public
- All
Type Members
- case class DatasetBoundFragmentDataset extends FragmentDataset with DatasetBoundGenomicDataset[Fragment, Fragment, FragmentDataset] with Product with Serializable
- sealed abstract class FragmentDataset extends AvroReadGroupGenomicDataset[Fragment, Fragment, FragmentDataset]
- class InterleavedFASTQInFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Logging
- case class ParquetUnboundFragmentDataset extends FragmentDataset with Product with Serializable
- case class RDDBoundFragmentDataset extends FragmentDataset with Product with Serializable
- class Tab5InFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, Tab5InFormatter] with Logging
- class Tab6InFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, Tab6InFormatter] with Logging
Value Members
-
object
FragmentDataset
Helper singleton object for building FragmentDatasets.
-
object
InterleavedFASTQInFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Serializable
InFormatter companion that creates an InFormatter that writes interleaved FASTQ.
-
object
Tab5InFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, Tab5InFormatter] with Serializable
InFormatter companion that creates an InFormatter that writes Bowtie tab5 format.
-
object
Tab6InFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, Tab6InFormatter] with Serializable
InFormatter companion that creates an InFormatter that writes Bowtie tab6 format.