org
.
bdgenomics
.
adam
.
converters
VariantAnnotations
object
VariantAnnotations
extends
Serializable
with
Logging
Linear Supertypes
Logging
,
Serializable
,
Serializable
,
AnyRef
,
Any
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Inherited
VariantAnnotations
Logging
Serializable
Serializable
AnyRef
Any
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Public
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Value Members
final
def
!=
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
Any
final
def
##
()
:
Int
Definition Classes
AnyRef → Any
final
def
==
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
Any
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
...
)
def
createVariantAnnotation
(
variant:
Variant
,
vc:
VariantContext
,
stringency:
ValidationStringency
=
ValidationStringency.STRICT
)
:
VariantAnnotation
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
classOf[java.lang.Throwable]
)
final
def
getClass
()
:
Class
[_]
Definition Classes
AnyRef → Any
def
hashCode
()
:
Int
Definition Classes
AnyRef → Any
final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
def
isTraceEnabled
()
:
Boolean
Attributes
protected
Definition Classes
Logging
def
log
:
Logger
Attributes
protected
Definition Classes
Logging
def
logDebug
(
msg: ⇒
String
,
throwable:
Throwable
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logDebug
(
msg: ⇒
String
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logError
(
msg: ⇒
String
,
throwable:
Throwable
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logError
(
msg: ⇒
String
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logInfo
(
msg: ⇒
String
,
throwable:
Throwable
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logInfo
(
msg: ⇒
String
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logName
:
String
Attributes
protected
Definition Classes
Logging
def
logTrace
(
msg: ⇒
String
,
throwable:
Throwable
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logTrace
(
msg: ⇒
String
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logWarning
(
msg: ⇒
String
,
throwable:
Throwable
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logWarning
(
msg: ⇒
String
)
:
Unit
Attributes
protected
Definition Classes
Logging
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
def
setIfNotEmpty
(
s:
String
,
setFn: (
String
) ⇒
Unit
)
:
Unit
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
toString
()
:
String
Definition Classes
AnyRef → Any
final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
Inherited from
Logging
Inherited from
Serializable
Inherited from
Serializable
Inherited from
AnyRef
Inherited from
Any
Ungrouped