org.bdgenomics.adam.instrumentation

Timers

object Timers extends Metrics

Contains Timers that are used to instrument ADAM.

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Metrics, Serializable, Serializable, AnyRef, Any
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  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. val BAMLoad: Timer

  7. val BQSRInDriver: Timer

  8. val ComputeCovariates: Timer

  9. val ComputeQualityScore: Timer

  10. val ConvertToSAM: Timer

  11. val ConvertToSAMRecord: Timer

  12. val CreateIndelRealignmentTargets: Timer

  13. val CreateKnownSnpsTable: Timer

  14. val CreateReferencePositionPair: Timer

  15. val FindTargets: Timer

  16. val GetExtraValues: Timer

  17. val GetReferenceFromReads: Timer

  18. val JoinTargets: Timer

  19. val LoadAlignmentRecords: Timer

  20. val LoadFragments: Timer

  21. val MapTargets: Timer

  22. val MarkDuplicatesInDriver: Timer

  23. val MarkReads: Timer

  24. val ObservationAccumulatorComb: Timer

  25. val ObservationAccumulatorSeq: Timer

  26. val ParquetLoad: Timer

  27. val PerformDuplicateMarking: Timer

  28. val RealignIndelsInDriver: Timer

  29. val RealignTargetGroup: Timer

  30. val RecalibrateRead: Timer

  31. val SAMSave: Timer

  32. val SaveAsADAM: Timer

  33. val ScoreAndMarkReads: Timer

  34. val SortByIndex: Timer

  35. val SortReads: Timer

  36. val SortTargets: Timer

  37. val SweepReadOverReferenceForQuality: Timer

  38. val TrimCigar: Timer

  39. val TrimLowQualityInDriver: Timer

  40. val TrimMDTag: Timer

  41. val TrimRead: Timer

  42. val TrimReadsInDriver: Timer

  43. val WriteADAMRecord: Timer

  44. val WriteBAMRecord: Timer

  45. val WriteCRAMRecord: Timer

  46. val WriteSAMRecord: Timer

  47. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  48. val clock: Clock

    Definition Classes
    Metrics

  49. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  50. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  51. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  52. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
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    @throws( classOf[java.lang.Throwable] )

  53. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  54. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  55. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  56. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  57. final def notify(): Unit

    Definition Classes
    AnyRef

  58. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  59. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  60. def timer(name: String): Timer

    Definition Classes
    Metrics

  61. def toString(): String

    Definition Classes
    AnyRef → Any

  62. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  63. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  64. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
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    @throws( ... )

Inherited from Metrics

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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