org.bdgenomics.adam.models

RecordGroup

case class RecordGroup(sample: String, recordGroupName: String, sequencingCenter: Option[String] = scala.None, description: Option[String] = scala.None, runDateEpoch: Option[Long] = scala.None, flowOrder: Option[String] = scala.None, keySequence: Option[String] = scala.None, library: Option[String] = scala.None, predictedMedianInsertSize: Option[Int] = scala.None, platform: Option[String] = scala.None, platformUnit: Option[String] = scala.None) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. RecordGroup
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
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Visibility
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Instance Constructors

  1. new RecordGroup(sample: String, recordGroupName: String, sequencingCenter: Option[String] = scala.None, description: Option[String] = scala.None, runDateEpoch: Option[Long] = scala.None, flowOrder: Option[String] = scala.None, keySequence: Option[String] = scala.None, library: Option[String] = scala.None, predictedMedianInsertSize: Option[Int] = scala.None, platform: Option[String] = scala.None, platformUnit: Option[String] = scala.None)

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. val description: Option[String]

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def equals(o: Any): Boolean

    Compares equality to another object.

    Compares equality to another object. Only checks equality via the sample and recordGroupName fields.

    o

    Object to compare against.

    returns

    Returns true if the object is a RecordGroup, and the sample and group name are equal. Else, returns false.

    Definition Classes
    RecordGroup → Equals → AnyRef → Any

  11. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. val flowOrder: Option[String]

  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  14. def hashCode(): Int

    Generates a hash from the sample and record group name fields.

    Generates a hash from the sample and record group name fields.

    returns

    Hash code for this object.

    Definition Classes
    RecordGroup → AnyRef → Any

  15. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  16. val keySequence: Option[String]

  17. val library: Option[String]

  18. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  19. final def notify(): Unit

    Definition Classes
    AnyRef

  20. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  21. val platform: Option[String]

  22. val platformUnit: Option[String]

  23. val predictedMedianInsertSize: Option[Int]

  24. val recordGroupName: String

  25. val runDateEpoch: Option[Long]

  26. val sample: String

  27. val sequencingCenter: Option[String]

  28. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  29. def toMetadata: RecordGroupMetadata

    Converts this into an Avro RecordGroupMetadata description for serialization to disk.

    Converts this into an Avro RecordGroupMetadata description for serialization to disk.

    returns

    Returns Avro version of RecordGroup.

  30. def toSAMReadGroupRecord(): SAMReadGroupRecord

    Converts a record group into a SAM formatted record group.

    Converts a record group into a SAM formatted record group.

    returns

    A SAM formatted record group.

  31. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  32. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  33. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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