org.bdgenomics.adam.models

SequenceRecord

case class SequenceRecord(name: String, length: Long, url: Option[String], md5: Option[String], refseq: Option[String], genbank: Option[String], assembly: Option[String], species: Option[String], referenceIndex: Option[Int]) extends Serializable with Product

Utility class within the SequenceDictionary; represents unique reference name-to-id correspondence

Linear Supertypes
Product, Equals, Serializable, Serializable, AnyRef, Any
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  1. SequenceRecord
  2. Product
  3. Equals
  4. Serializable
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Instance Constructors

  1. new SequenceRecord(name: String, length: Long, url: Option[String], md5: Option[String], refseq: Option[String], genbank: Option[String], assembly: Option[String], species: Option[String], referenceIndex: Option[Int])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. val assembly: Option[String]

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def equals(o: Any): Boolean

    Definition Classes
    SequenceRecord → Equals → AnyRef → Any

  11. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. val genbank: Option[String]

  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  14. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  15. val length: Long

  16. val md5: Option[String]

  17. val name: String

  18. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  19. final def notify(): Unit

    Definition Classes
    AnyRef

  20. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  21. val referenceIndex: Option[Int]

  22. val refseq: Option[String]

  23. val species: Option[String]

  24. def stripIndex: SequenceRecord

    returns

    Returns a new sequence record with the index unset.

  25. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  26. def toSAMSequenceRecord: SAMSequenceRecord

    Converts this sequence record into a SAM sequence record.

    Converts this sequence record into a SAM sequence record.

    returns

    A SAM formatted sequence record.

  27. def toString(): String

    Definition Classes
    SequenceRecord → AnyRef → Any

  28. val url: Option[String]

  29. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  30. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  31. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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