org.bdgenomics.adam.projections

VariantCallingAnnotationsField

object VariantCallingAnnotationsField extends FieldEnumeration

Enumeration of VariantCallingAnnotations field names for predicates and projections.

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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Inherited
  1. VariantCallingAnnotationsField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Type Members

  1. class SchemaVal extends Val with FieldValue

    Definition Classes
    FieldEnumeration

  2. class Val extends Value with Serializable

    Attributes
    protected
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID( -3501153230598116017L )

  3. abstract class Value extends Ordered[Value] with Serializable

    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID( 7091335633555234129L )

  4. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

    Definition Classes
    Enumeration

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def SchemaValue: SchemaVal

    Attributes
    protected
    Definition Classes
    FieldEnumeration

  7. final def Value(i: Int, name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  8. final def Value(name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  9. final def Value(i: Int): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  10. final def Value: Value

    Attributes
    protected
    Definition Classes
    Enumeration

  11. val alleleCountMLE: SchemaVal

  12. val alleleFrequencyMLE: SchemaVal

  13. final def apply(x: Int): Value

    Definition Classes
    Enumeration

  14. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  15. val baseQRankSum: SchemaVal

  16. val clippingRankSum: SchemaVal

  17. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  18. val culprit: SchemaVal

  19. val downsampled: SchemaVal

  20. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  21. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  22. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  23. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  24. val haplotypeScore: SchemaVal

  25. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  26. val inbreedingCoefficient: SchemaVal

  27. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  28. val mapq0Reads: SchemaVal

  29. final def maxId: Int

    Definition Classes
    Enumeration

  30. val mqRankSum: SchemaVal

  31. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  32. var nextId: Int

    Attributes
    protected
    Definition Classes
    Enumeration

  33. var nextName: Iterator[String]

    Attributes
    protected
    Definition Classes
    Enumeration

  34. final def notify(): Unit

    Definition Classes
    AnyRef

  35. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  36. val readDepth: SchemaVal

  37. val readPositionRankSum: SchemaVal

  38. def readResolve(): AnyRef

    Attributes
    protected
    Definition Classes
    Enumeration

  39. val recordSchema: Schema

    Definition Classes
    FieldEnumeration

  40. val rmsMapQ: SchemaVal

  41. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  42. def toString(): String

    Definition Classes
    Enumeration → AnyRef → Any

  43. val usedForNegativeTrainingSet: SchemaVal

  44. val usedForPositiveTrainingSet: SchemaVal

  45. def values: ValueSet

    Definition Classes
    Enumeration

  46. val variantCallErrorProbability: SchemaVal

  47. val variantFilters: SchemaVal

  48. val variantIsPassing: SchemaVal

  49. val variantQualityByDepth: SchemaVal

  50. val vqslod: SchemaVal

  51. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  52. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  53. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  54. final def withName(s: String): Value

    Definition Classes
    Enumeration

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped