LoadAlignmentRecords

LoadFragments

label

leftAlignIndel

length

lengths

library

listToJavaList

listToString

loadAlignments

loadAlignmentsFromPaths

loadBED

loadBam

loadFasta

loadFastq

loadFeatures

loadFragments

loadGTF

loadGenes

loadGenotypes

loadIndexedBam

loadInterleavedFastq

loadInterleavedFastqAsFragments

loadIntervalList

loadNarrowPeak

loadPairedFastq

loadParquet

loadParquetAlignments

loadParquetContigFragments

loadParquetFeatures

loadParquetFragments

loadParquetGenotypes

loadParquetVariantAnnotations

loadParquetVariants

loadReferenceFile

loadSequence

loadUnpairedFastq

loadVariantAnnotations

loadVariants

loadVcf

loadVcfAnnotations

logProbabilityToPhred

lookup

lt