org.bdgenomics.adam.models

SequenceDictionary

class SequenceDictionary extends Serializable

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. SequenceDictionary
  2. Serializable
  3. Serializable
  4. AnyRef
  5. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Instance Constructors

  1. new SequenceDictionary()

  2. new SequenceDictionary(records: Vector[SequenceRecord])

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. def +(record: SequenceRecord): SequenceDictionary

  4. def ++(that: SequenceDictionary): SequenceDictionary

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  6. def apply(name: String): Option[SequenceRecord]

  7. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. def containsRefName(name: String): Boolean

  10. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  11. def equals(o: Any): Boolean

    Definition Classes
    SequenceDictionary → AnyRef → Any

  12. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  14. def hashCode(): Int

    Definition Classes
    SequenceDictionary → AnyRef → Any

  15. def isCompatibleWith(that: SequenceDictionary): Boolean

  16. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  17. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  18. final def notify(): Unit

    Definition Classes
    AnyRef

  19. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  20. val records: Vector[SequenceRecord]

  21. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  22. def toSAMSequenceDictionary: SAMSequenceDictionary

    Converts this ADAM style sequence dictionary into a SAM style sequence dictionary.

    Converts this ADAM style sequence dictionary into a SAM style sequence dictionary.

    returns

    Returns a SAM formatted sequence dictionary.

  23. def toString(): String

    Definition Classes
    SequenceDictionary → AnyRef → Any

  24. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  25. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  26. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped