classBaseQualityRecalibration extends Serializable with Logging
The algorithm proceeds in two phases. First, we make a pass over the reads
to collect statistics and build the recalibration tables. Then, we perform
a second pass over the reads to apply the recalibration and assign adjusted
quality scores.
The algorithm proceeds in two phases. First, we make a pass over the reads to collect statistics and build the recalibration tables. Then, we perform a second pass over the reads to apply the recalibration and assign adjusted quality scores.