org.bdgenomics.formats.avro.OntologyTerm.accession |
org.bdgenomics.formats.avro.Dbxref.accession |
org.bdgenomics.formats.avro.Feature.aliases |
org.bdgenomics.formats.avro.Fragment.alignments |
org.bdgenomics.formats.avro.VariantAnnotation.alleleCount |
org.bdgenomics.formats.avro.VariantAnnotation.alleleFrequency |
org.bdgenomics.formats.avro.Genotype.alleles |
org.bdgenomics.formats.avro.Slice.alphabet |
org.bdgenomics.formats.avro.Sequence.alphabet |
org.bdgenomics.formats.avro.Read.alphabet |
org.bdgenomics.formats.avro.TranscriptEffect.alternateAllele |
org.bdgenomics.formats.avro.Variant.alternateAllele |
org.bdgenomics.formats.avro.Genotype.alternateReadDepth |
org.bdgenomics.formats.avro.VariantAnnotation.ancestralAllele |
org.bdgenomics.formats.avro.Variant.annotation |
org.bdgenomics.formats.avro.Reference.assembly |
org.bdgenomics.formats.avro.Feature.attributes |
org.bdgenomics.formats.avro.Alignment.attributes |
org.bdgenomics.formats.avro.VariantCallingAnnotations.attributes |
org.bdgenomics.formats.avro.Slice.attributes |
org.bdgenomics.formats.avro.Sample.attributes |
org.bdgenomics.formats.avro.Sequence.attributes |
org.bdgenomics.formats.avro.VariantAnnotation.attributes |
org.bdgenomics.formats.avro.Read.attributes |
org.bdgenomics.formats.avro.VariantCallingAnnotations.baseQRankSum |
org.bdgenomics.formats.avro.Alignment.basesTrimmedFromEnd |
org.bdgenomics.formats.avro.Alignment.basesTrimmedFromStart |
org.bdgenomics.formats.avro.TranscriptEffect.biotype |
org.bdgenomics.formats.avro.TranscriptEffect.cdnaLength |
org.bdgenomics.formats.avro.TranscriptEffect.cdnaPosition |
org.bdgenomics.formats.avro.TranscriptEffect.cdsLength |
org.bdgenomics.formats.avro.TranscriptEffect.cdsPosition |
org.bdgenomics.formats.avro.Alignment.cigar |
org.bdgenomics.formats.avro.VariantAnnotation.cigar |
org.bdgenomics.formats.avro.Feature.circular |
org.bdgenomics.formats.avro.ProcessingStep.commandLine |
org.bdgenomics.formats.avro.VariantCallingAnnotations.culprit |
org.bdgenomics.formats.avro.OntologyTerm.db |
org.bdgenomics.formats.avro.Dbxref.db |
org.bdgenomics.formats.avro.VariantAnnotation.dbSnp |
org.bdgenomics.formats.avro.Feature.dbxrefs |
org.bdgenomics.formats.avro.Feature.derivesFrom |
org.bdgenomics.formats.avro.Slice.description |
org.bdgenomics.formats.avro.ProcessingStep.description |
org.bdgenomics.formats.avro.ReadGroup.description |
org.bdgenomics.formats.avro.Sequence.description |
org.bdgenomics.formats.avro.Read.description |
org.bdgenomics.formats.avro.TranscriptEffect.distance |
org.bdgenomics.formats.avro.VariantCallingAnnotations.downsampled |
org.bdgenomics.formats.avro.Alignment.duplicateRead |
org.bdgenomics.formats.avro.TranscriptEffect.effects |
org.bdgenomics.formats.avro.Genotype.end |
org.bdgenomics.formats.avro.Feature.end |
org.bdgenomics.formats.avro.Alignment.end |
org.bdgenomics.formats.avro.Slice.end |
org.bdgenomics.formats.avro.Variant.end |
org.bdgenomics.formats.avro.Feature.exonId |
org.bdgenomics.formats.avro.Genotype.expectedAlleleDosage |
org.bdgenomics.formats.avro.Alignment.failedVendorQualityChecks |
org.bdgenomics.formats.avro.Feature.featureId |
org.bdgenomics.formats.avro.TranscriptEffect.featureId |
org.bdgenomics.formats.avro.Feature.featureType |
org.bdgenomics.formats.avro.TranscriptEffect.featureType |
org.bdgenomics.formats.avro.VariantCallingAnnotations.filtersApplied |
org.bdgenomics.formats.avro.Variant.filtersApplied |
org.bdgenomics.formats.avro.VariantCallingAnnotations.filtersFailed |
org.bdgenomics.formats.avro.Variant.filtersFailed |
org.bdgenomics.formats.avro.VariantCallingAnnotations.filtersPassed |
org.bdgenomics.formats.avro.Variant.filtersPassed |
org.bdgenomics.formats.avro.VariantCallingAnnotations.fisherStrandBiasPValue |
org.bdgenomics.formats.avro.ReadGroup.flowOrder |
org.bdgenomics.formats.avro.VariantAnnotation.forwardReadDepth |
org.bdgenomics.formats.avro.Feature.frame |
org.bdgenomics.formats.avro.Feature.gap |
org.bdgenomics.formats.avro.Feature.geneId |
org.bdgenomics.formats.avro.TranscriptEffect.geneId |
org.bdgenomics.formats.avro.TranscriptEffect.geneName |
org.bdgenomics.formats.avro.TranscriptEffect.genomicHgvs |
org.bdgenomics.formats.avro.Genotype.genotypeLikelihoods |
org.bdgenomics.formats.avro.VariantCallingAnnotations.genotypePosteriors |
org.bdgenomics.formats.avro.VariantCallingAnnotations.genotypePriors |
org.bdgenomics.formats.avro.Genotype.genotypeQuality |
org.bdgenomics.formats.avro.VariantAnnotation.hapMap2 |
org.bdgenomics.formats.avro.VariantAnnotation.hapMap3 |
org.bdgenomics.formats.avro.ProcessingStep.id |
org.bdgenomics.formats.avro.Sample.id |
org.bdgenomics.formats.avro.ReadGroup.id |
org.bdgenomics.formats.avro.Slice.index |
org.bdgenomics.formats.avro.Reference.index |
org.bdgenomics.formats.avro.Alignment.insertSize |
org.bdgenomics.formats.avro.Fragment.insertSize |
org.bdgenomics.formats.avro.ReadGroup.keySequence |
org.bdgenomics.formats.avro.Slice.length |
org.bdgenomics.formats.avro.Reference.length |
org.bdgenomics.formats.avro.Sequence.length |
org.bdgenomics.formats.avro.Read.length |
org.bdgenomics.formats.avro.ReadGroup.library |
org.bdgenomics.formats.avro.Alignment.mappingQuality |
org.bdgenomics.formats.avro.VariantCallingAnnotations.mapq0Reads |
org.bdgenomics.formats.avro.Alignment.mateAlignmentStart |
org.bdgenomics.formats.avro.Alignment.mateMapped |
org.bdgenomics.formats.avro.Alignment.mateNegativeStrand |
org.bdgenomics.formats.avro.Alignment.mateReferenceName |
org.bdgenomics.formats.avro.Reference.md5 |
org.bdgenomics.formats.avro.TranscriptEffect.messages |
org.bdgenomics.formats.avro.Genotype.minReadDepth |
org.bdgenomics.formats.avro.Alignment.mismatchingPositions |
org.bdgenomics.formats.avro.VariantCallingAnnotations.mqRankSum |
org.bdgenomics.formats.avro.Feature.name |
org.bdgenomics.formats.avro.Slice.name |
org.bdgenomics.formats.avro.Fragment.name |
org.bdgenomics.formats.avro.Reference.name |
org.bdgenomics.formats.avro.Sample.name |
org.bdgenomics.formats.avro.Sequence.name |
org.bdgenomics.formats.avro.Read.name |
org.bdgenomics.formats.avro.Variant.names |
org.bdgenomics.formats.avro.Genotype.nonReferenceLikelihoods |
org.bdgenomics.formats.avro.Feature.notes |
org.bdgenomics.formats.avro.Feature.ontologyTerms |
org.bdgenomics.formats.avro.Alignment.originalCigar |
org.bdgenomics.formats.avro.Alignment.originalQualityScores |
org.bdgenomics.formats.avro.Alignment.originalStart |
org.bdgenomics.formats.avro.Feature.parentIds |
org.bdgenomics.formats.avro.Feature.phase |
org.bdgenomics.formats.avro.Genotype.phased |
org.bdgenomics.formats.avro.Genotype.phaseQuality |
org.bdgenomics.formats.avro.Genotype.phaseSetId |
org.bdgenomics.formats.avro.ReadGroup.platform |
org.bdgenomics.formats.avro.ReadGroup.platformModel |
org.bdgenomics.formats.avro.ReadGroup.platformUnit |
org.bdgenomics.formats.avro.ReadGroup.predictedMedianInsertSize |
org.bdgenomics.formats.avro.ProcessingStep.previousId |
org.bdgenomics.formats.avro.Alignment.primaryAlignment |
org.bdgenomics.formats.avro.Genotype.processingDescription |
org.bdgenomics.formats.avro.Sample.processingSteps |
org.bdgenomics.formats.avro.ReadGroup.processingSteps |
org.bdgenomics.formats.avro.ProcessingStep.programName |
org.bdgenomics.formats.avro.Alignment.properPair |
org.bdgenomics.formats.avro.TranscriptEffect.proteinHgvs |
org.bdgenomics.formats.avro.TranscriptEffect.proteinLength |
org.bdgenomics.formats.avro.TranscriptEffect.proteinPosition |
org.bdgenomics.formats.avro.Variant.quality |
org.bdgenomics.formats.avro.Alignment.qualityScores |
org.bdgenomics.formats.avro.Read.qualityScores |
org.bdgenomics.formats.avro.TranscriptEffect.rank |
org.bdgenomics.formats.avro.Genotype.readDepth |
org.bdgenomics.formats.avro.VariantAnnotation.readDepth |
org.bdgenomics.formats.avro.Alignment.readGroupId |
org.bdgenomics.formats.avro.Fragment.readGroupId |
org.bdgenomics.formats.avro.Alignment.readGroupSampleId |
org.bdgenomics.formats.avro.Alignment.readInFragment |
org.bdgenomics.formats.avro.Alignment.readMapped |
org.bdgenomics.formats.avro.Alignment.readName |
org.bdgenomics.formats.avro.Alignment.readNegativeStrand |
org.bdgenomics.formats.avro.Alignment.readPaired |
org.bdgenomics.formats.avro.VariantCallingAnnotations.readPositionRankSum |
org.bdgenomics.formats.avro.Variant.referenceAllele |
org.bdgenomics.formats.avro.VariantAnnotation.referenceForwardReadDepth |
org.bdgenomics.formats.avro.Genotype.referenceName |
org.bdgenomics.formats.avro.Feature.referenceName |
org.bdgenomics.formats.avro.Alignment.referenceName |
org.bdgenomics.formats.avro.Variant.referenceName |
org.bdgenomics.formats.avro.Genotype.referenceReadDepth |
org.bdgenomics.formats.avro.VariantAnnotation.referenceReadDepth |
org.bdgenomics.formats.avro.VariantAnnotation.referenceReverseReadDepth |
org.bdgenomics.formats.avro.VariantAnnotation.reverseReadDepth |
org.bdgenomics.formats.avro.VariantCallingAnnotations.rmsMapQ |
org.bdgenomics.formats.avro.ReadGroup.runDateEpoch |
org.bdgenomics.formats.avro.Genotype.sampleDescription |
org.bdgenomics.formats.avro.Genotype.sampleId |
org.bdgenomics.formats.avro.Feature.sampleId |
org.bdgenomics.formats.avro.ReadGroup.sampleId |
org.bdgenomics.formats.avro.Feature.score |
org.bdgenomics.formats.avro.Alignment.secondaryAlignment |
org.bdgenomics.formats.avro.Alignment.sequence |
org.bdgenomics.formats.avro.Slice.sequence |
org.bdgenomics.formats.avro.Sequence.sequence |
org.bdgenomics.formats.avro.Read.sequence |
org.bdgenomics.formats.avro.ReadGroup.sequencingCenter |
org.bdgenomics.formats.avro.Slice.slices |
org.bdgenomics.formats.avro.VariantAnnotation.somatic |
org.bdgenomics.formats.avro.Feature.source |
org.bdgenomics.formats.avro.Reference.sourceAccessions |
org.bdgenomics.formats.avro.Reference.sourceUri |
org.bdgenomics.formats.avro.Reference.species |
org.bdgenomics.formats.avro.Genotype.splitFromMultiAllelic |
org.bdgenomics.formats.avro.Variant.splitFromMultiAllelic |
org.bdgenomics.formats.avro.Genotype.start |
org.bdgenomics.formats.avro.Feature.start |
org.bdgenomics.formats.avro.Alignment.start |
org.bdgenomics.formats.avro.Slice.start |
org.bdgenomics.formats.avro.Variant.start |
org.bdgenomics.formats.avro.Feature.strand |
org.bdgenomics.formats.avro.Slice.strand |
org.bdgenomics.formats.avro.Genotype.strandBiasComponents |
org.bdgenomics.formats.avro.Alignment.supplementaryAlignment |
org.bdgenomics.formats.avro.Feature.target |
org.bdgenomics.formats.avro.VariantAnnotation.thousandGenomes |
org.bdgenomics.formats.avro.TranscriptEffect.total |
org.bdgenomics.formats.avro.Slice.totalLength |
org.bdgenomics.formats.avro.VariantAnnotation.transcriptEffects |
org.bdgenomics.formats.avro.TranscriptEffect.transcriptHgvs |
org.bdgenomics.formats.avro.Feature.transcriptId |
org.bdgenomics.formats.avro.VariantAnnotation.validated |
org.bdgenomics.formats.avro.Genotype.variant |
org.bdgenomics.formats.avro.Genotype.variantCallingAnnotations |
org.bdgenomics.formats.avro.ProcessingStep.version |
org.bdgenomics.formats.avro.VariantCallingAnnotations.vqslod |