Bedtools intersect wrapper as a function FeatureDataset → FeatureDataset,
for use in cannoli-shell or notebooks.
val args = new BedtoolsIntersectFnArgs()
args.b = "foo.bed"
args.useDocker = true
val features = ...
val pipedFeatures = new BedtoolsIntersectFn(args, sc).apply(features)
Linear Supertypes
CannoliFn[FeatureDataset, FeatureDataset], Logging, (FeatureDataset) ⇒ FeatureDataset, AnyRef, Any
Bedtools intersect wrapper as a function FeatureDataset → FeatureDataset, for use in cannoli-shell or notebooks.
val args = new BedtoolsIntersectFnArgs() args.b = "foo.bed" args.useDocker = true val features = ... val pipedFeatures = new BedtoolsIntersectFn(args, sc).apply(features)