Class

org.bdgenomics.cannoli

BlastnArgs

Related Doc: package cannoli

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class BlastnArgs extends Args4jBase

Blastn function arguments.

Linear Supertypes
Args4jBase, AnyRef, Any
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  1. BlastnArgs
  2. Args4jBase
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Instance Constructors

  1. new BlastnArgs()

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. var addFiles: Boolean

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  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. var db: String

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  8. var doPrintUsage: Boolean

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    Definition Classes
    Args4jBase

  9. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  10. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  11. var evalue: Double

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  12. var executable: String

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  13. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  14. var gapExtend: Integer

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  15. var gapOpen: Integer

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  16. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  17. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  18. var image: String

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  19. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  20. var maxHsps: Integer

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  21. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  22. final def notify(): Unit

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    Definition Classes
    AnyRef

  23. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  24. var numThreads: Integer

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  25. var penalty: Integer

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  26. var percentIdentity: Double

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  27. var reward: Integer

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  28. var stringency: String

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  29. var sudo: Boolean

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  30. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  31. def toString(): String

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    Definition Classes
    AnyRef → Any

  32. var useDocker: Boolean

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  33. var useSingularity: Boolean

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  34. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  35. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  36. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  37. var wordSize: Integer

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Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

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