Class

org.bdgenomics.cannoli

Minimap2Args

Related Doc: package cannoli

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class Minimap2Args extends Args4jBase

Minimap2 function arguments.

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Args4jBase, AnyRef, Any
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Instance Constructors

  1. new Minimap2Args()

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    AnyRef → Any

  4. var addFiles: Boolean

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  5. final def asInstanceOf[T0]: T0

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  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
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    AnyRef
    Annotations
    @throws( ... )

  7. var doPrintUsage: Boolean

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    Definition Classes
    Args4jBase

  8. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  9. def equals(arg0: Any): Boolean

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    AnyRef → Any

  10. var executable: String

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  11. def finalize(): Unit

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    protected[java.lang]
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    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. final def getClass(): Class[_]

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    AnyRef → Any

  13. def hashCode(): Int

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    AnyRef → Any

  14. var image: String

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  15. var indexPath: String

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  16. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  17. var minimap2Args: String

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  18. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  19. final def notify(): Unit

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    Definition Classes
    AnyRef

  20. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  21. var preset: String

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  22. var seed: Integer

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  23. var sudo: Boolean

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  24. final def synchronized[T0](arg0: ⇒ T0): T0

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  25. def toString(): String

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    Definition Classes
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  26. var useDocker: Boolean

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  27. var useSingularity: Boolean

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  28. final def wait(): Unit

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    Annotations
    @throws( ... )

  29. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  30. final def wait(arg0: Long): Unit

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Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

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