Class

org.bdgenomics.cannoli

SingleEndBowtie2Args

Related Doc: package cannoli

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class SingleEndBowtie2Args extends Args4jBase

Single-end read Bowtie 2 function arguments.

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Args4jBase, AnyRef, Any
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Instance Constructors

  1. new SingleEndBowtie2Args()

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Value Members

  1. final def !=(arg0: Any): Boolean

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    AnyRef → Any

  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. var addFiles: Boolean

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  5. final def asInstanceOf[T0]: T0

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  6. var bowtie2Args: String

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  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
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    AnyRef
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    @throws( ... )

  8. var doPrintUsage: Boolean

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    Args4jBase

  9. final def eq(arg0: AnyRef): Boolean

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  10. def equals(arg0: Any): Boolean

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  11. var executable: String

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  12. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )

  13. final def getClass(): Class[_]

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  14. def hashCode(): Int

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  15. var image: String

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  16. var indexPath: String

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  17. final def isInstanceOf[T0]: Boolean

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  18. final def ne(arg0: AnyRef): Boolean

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  19. final def notify(): Unit

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    AnyRef

  20. final def notifyAll(): Unit

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  21. var sudo: Boolean

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  22. final def synchronized[T0](arg0: ⇒ T0): T0

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  23. def toString(): String

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  24. var useDocker: Boolean

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  25. var useSingularity: Boolean

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  26. final def wait(): Unit

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    @throws( ... )

  27. final def wait(arg0: Long, arg1: Int): Unit

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  28. final def wait(arg0: Long): Unit

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Inherited from Args4jBase

Inherited from AnyRef

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