org.bdgenomics.qc.cli

GenotypeConcordance

class GenotypeConcordance extends BDGSparkCommand[GenotypeConcordanceArgs] with Logging

Linear Supertypes
BDGSparkCommand[GenotypeConcordanceArgs], Logging, BDGCommand, Runnable, AnyRef, Any
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Inherited
  1. GenotypeConcordance
  2. BDGSparkCommand
  3. Logging
  4. BDGCommand
  5. Runnable
  6. AnyRef
  7. Any
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Instance Constructors

  1. new GenotypeConcordance(args: GenotypeConcordanceArgs)

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  4. val args: GenotypeConcordanceArgs

    Attributes
    protected
    Definition Classes
    GenotypeConcordance → BDGSparkCommand
  5. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  6. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  7. val companion: BDGCommandCompanion

    Definition Classes
    GenotypeConcordance → BDGCommand
  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  9. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  12. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  13. def initializeMetrics(sc: SparkContext): Option[MetricsListener]

    Definition Classes
    BDGSparkCommand
  14. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  15. def isTraceEnabled(): Boolean

    Attributes
    protected
    Definition Classes
    Logging
  16. def log: Logger

    Attributes
    protected
    Definition Classes
    Logging
  17. def logDebug(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  18. def logDebug(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  19. def logError(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  20. def logError(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  21. def logInfo(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  22. def logInfo(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  23. def logName: String

    Attributes
    protected
    Definition Classes
    Logging
  24. def logTrace(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  25. def logTrace(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  26. def logWarning(msg: ⇒ String, throwable: Throwable): Unit

    Attributes
    protected
    Definition Classes
    Logging
  27. def logWarning(msg: ⇒ String): Unit

    Attributes
    protected
    Definition Classes
    Logging
  28. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  29. final def notify(): Unit

    Definition Classes
    AnyRef
  30. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  31. def printMetrics(totalTime: Long, metricsListener: Option[MetricsListener]): Unit

    Definition Classes
    BDGSparkCommand
  32. def run(sc: SparkContext): Unit

    Definition Classes
    GenotypeConcordance → BDGSparkCommand
  33. def run(): Unit

    Definition Classes
    BDGSparkCommand → Runnable
  34. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  35. def toString(): String

    Definition Classes
    AnyRef → Any
  36. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  37. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  38. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from BDGSparkCommand[GenotypeConcordanceArgs]

Inherited from Logging

Inherited from BDGCommand

Inherited from Runnable

Inherited from AnyRef

Inherited from Any

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