org.bdgenomics.quinine.cli

PanelMetricsArgs

class PanelMetricsArgs extends Args4jBase

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  1. PanelMetricsArgs
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Instance Constructors

  1. new PanelMetricsArgs()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. val baitPath: String

  8. val baseQualThreshold: Int

  9. val cacheReads: Boolean

  10. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  11. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase

  12. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  14. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
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    @throws( classOf[java.lang.Throwable] )

  15. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  16. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  17. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  18. val mappingQualThreshold: Int

  19. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  20. final def notify(): Unit

    Definition Classes
    AnyRef

  21. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  22. val panelName: String

  23. var printMetrics: Boolean

    Definition Classes
    Args4jBase

  24. val readPath: String

  25. val statPath: String

  26. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  27. val targetPath: String

  28. def toString(): String

    Definition Classes
    AnyRef → Any

  29. final def wait(): Unit

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    AnyRef
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    @throws( ... )

  30. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  31. final def wait(arg0: Long): Unit

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    @throws( ... )

Inherited from Args4jBase

Inherited from AnyRef

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