BaseQualityScores

Value Members

1. final def !=(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

2. final def !=(arg0: Any): Boolean

   Definition Classes

   Any

3. final def ##(): Int

   Definition Classes

   AnyRef → Any

4. final def ==(arg0: AnyRef): Boolean

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5. final def ==(arg0: Any): Boolean

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6. final def asInstanceOf[T0]: T0

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7. def clone(): AnyRef

   Attributes

   protected[java.lang]

   Definition Classes

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   Annotations

   @throws( ... )

8. def createFilter(filterDef: String): ComparisonsFilter[(Int, Int)]

   parses and creates a filter for this BucketComparisons value, conforming to the definition in the filterDef argument.

   parses and creates a filter for this BucketComparisons value, conforming to the definition in the filterDef argument.

   filterDef

   a filter definition string, e.g. ">3"

   returns

   A ComparisonsFilter value that performs the indicated comparison on the output of 'this' (i.e. T values)

   Definition Classes

   PointComparisons → BucketComparisons

9. val description: String

   Description of the comparison, to be used by the "list comparisons" CLI option.

   Description of the comparison, to be used by the "list comparisons" CLI option.

   Definition Classes

   BaseQualityScores → BucketComparisons

10. final def eq(arg0: AnyRef): Boolean

    Definition Classes

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11. def equals(arg0: Any): Boolean

    Definition Classes

    AnyRef → Any

12. def finalize(): Unit

    Attributes

    protected[java.lang]

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    Annotations

    @throws( classOf[java.lang.Throwable] )

13. final def getClass(): Class[_]

    Definition Classes

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14. def hashCode(): Int

    Definition Classes

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15. final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

16. def matchedByName(bucket1: ReadBucket, bucket2: ReadBucket): Seq[(Int, Int)]

    The records have been matched by their names, but the rest may be mismatched.

    The records have been matched by their names, but the rest may be mismatched.

    Definition Classes

    BaseQualityScores → BucketComparisons

17. val name: String

    Name of the comparison.

    Name of the comparison. Should be identifiable, and able to be written on the command line.

    Definition Classes

    BaseQualityScores → BucketComparisons

18. final def ne(arg0: AnyRef): Boolean

    Definition Classes

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19. final def notify(): Unit

    Definition Classes

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20. final def notifyAll(): Unit

    Definition Classes

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21. def points(records1: Iterable[AlignmentRecord], records2: Iterable[AlignmentRecord]): Seq[(Int, Int)]

22. def schemas: Seq[FieldValue]

    All of the schemas which this comparison uses.

    All of the schemas which this comparison uses.

    Definition Classes

    BaseQualityScores → BucketComparisons

23. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

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24. def toString(): String

    Definition Classes

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25. final def wait(): Unit

    Definition Classes

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    Annotations

    @throws( ... )

26. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

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    Annotations

    @throws( ... )

27. final def wait(arg0: Long): Unit

    Definition Classes

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    Annotations

    @throws( ... )