org.bdgenomics.quinine.metrics

BucketComparisons

trait BucketComparisons[+T] extends AnyRef

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Abstract Value Members

  1. abstract def createFilter(filterDef: String): ComparisonsFilter[Any]

    parses and creates a filter for this BucketComparisons value, conforming to the definition in the filterDef argument.

    parses and creates a filter for this BucketComparisons value, conforming to the definition in the filterDef argument.

    filterDef

    a filter definition string, e.g. ">3"

    returns

    A ComparisonsFilter value that performs the indicated comparison on the output of 'this' (i.e. T values)

  2. abstract def description: String

    Description of the comparison, to be used by the "list comparisons" CLI option.

  3. abstract def matchedByName(bucket1: ReadBucket, bucket2: ReadBucket): Seq[T]

    The records have been matched by their names, but the rest may be mismatched.

  4. abstract def name: String

    Name of the comparison.

    Name of the comparison. Should be identifiable, and able to be written on the command line.

  5. abstract def schemas: Seq[FieldValue]

    All of the schemas which this comparison uses.

Concrete Value Members

  1. final def !=(arg0: AnyRef): Boolean

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  2. final def !=(arg0: Any): Boolean

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  3. final def ##(): Int

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  4. final def ==(arg0: AnyRef): Boolean

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  8. final def eq(arg0: AnyRef): Boolean

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  9. def equals(arg0: Any): Boolean

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  10. def finalize(): Unit

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  11. final def getClass(): Class[_]

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  15. final def notify(): Unit

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  17. final def synchronized[T0](arg0: ⇒ T0): T0

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  20. final def wait(arg0: Long, arg1: Int): Unit

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  21. final def wait(arg0: Long): Unit

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