org.bdgenomics.quinine.metrics

CombinedComparisons

class CombinedComparisons[T] extends BucketComparisons[Collection[Seq[T]]] with Serializable

Linear Supertypes
Serializable, Serializable, BucketComparisons[Collection[Seq[T]]], AnyRef, Any
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Inherited
  1. CombinedComparisons
  2. Serializable
  3. Serializable
  4. BucketComparisons
  5. AnyRef
  6. Any
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Instance Constructors

  1. new CombinedComparisons(inner: Seq[BucketComparisons[T]])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any
  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any
  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. def createFilter(filterDef: String): ComparisonsFilter[Any]

    parses and creates a filter for this BucketComparisons value, conforming to the definition in the filterDef argument.

    parses and creates a filter for this BucketComparisons value, conforming to the definition in the filterDef argument.

    filterDef

    a filter definition string, e.g. ">3"

    returns

    A ComparisonsFilter value that performs the indicated comparison on the output of 'this' (i.e. T values)

    Definition Classes
    CombinedComparisonsBucketComparisons
  9. def description: String

    Description of the comparison, to be used by the "list comparisons" CLI option.

    Description of the comparison, to be used by the "list comparisons" CLI option.

    Definition Classes
    CombinedComparisonsBucketComparisons
  10. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  11. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  12. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  14. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  15. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  16. def matchedByName(bucket1: ReadBucket, bucket2: ReadBucket): Seq[Collection[Seq[T]]]

    The records have been matched by their names, but the rest may be mismatched.

    The records have been matched by their names, but the rest may be mismatched.

    Definition Classes
    CombinedComparisonsBucketComparisons
  17. def name: String

    Name of the comparison.

    Name of the comparison. Should be identifiable, and able to be written on the command line.

    Definition Classes
    CombinedComparisonsBucketComparisons
  18. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  19. final def notify(): Unit

    Definition Classes
    AnyRef
  20. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  21. def schemas: Seq[FieldValue]

    All of the schemas which this comparison uses.

    All of the schemas which this comparison uses.

    Definition Classes
    CombinedComparisonsBucketComparisons
  22. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  23. def toString(): String

    Definition Classes
    AnyRef → Any
  24. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  25. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  26. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from BucketComparisons[Collection[Seq[T]]]

Inherited from AnyRef

Inherited from Any

Ungrouped