org.bdgenomics.quinine.metrics.coverage
Given an RDD of reads, computes the coverage of all sites where at least one read is aligned.
Given an RDD of reads, computes the coverage of all sites where at least one read is aligned.
An RDD of aligned reads.
Returns an RDD containing tuples of (genomic position, number of bases at this site).
Computes coverage at all sites covered in a sequencing dataset.