org.bdgenomics.quinine.rdd

variation

package variation

Visibility
  1. Public
  2. All

Type Members

  1. class ConcordanceTable extends AnyRef

    Helper class for maintaining the genotype concordance table and computing the relevant metrics.

  2. class GenotypeConcordanceRDDFunctions extends Serializable with Logging

  3. case class GenotypesSummary(perSampleStatistics: StatisticsMap, singletonCount: Long, distinctVariantCount: Long) extends Product with Serializable

    Summary statistics for a set of genotypes.

  4. case class GenotypesSummaryCounts(genotypesCounts: GenotypeAlleleCounts, singleNucleotideVariantCounts: VariantCounts, multipleNucleotideVariantCount: Long, insertionCount: Long, deletionCount: Long, readCount: Option[Long], phasedCount: Long) extends Product with Serializable

    Simple counts of various properties across a set of genotypes.

Value Members

  1. object ConcordanceTable

  2. object GenotypesSummary extends Serializable

  3. object GenotypesSummaryCounts extends Serializable

  4. object GenotypesSummaryFormatting

    Functions for converting a GenotypesSummary object to various text formats.

Ungrouped