Uses of Class
org.biojava.nbio.alignment.GuideTree

Packages that use GuideTree

Package	Description
org.biojava.nbio.alignment

Uses of GuideTree in org.biojava.nbio.alignment

Methods in org.biojava.nbio.alignment with parameters of type GuideTree

Modifier and Type	Method	Description
static <S extends org.biojava.nbio.core.sequence.template.Sequence<C>,C extends org.biojava.nbio.core.sequence.template.Compound> org.biojava.nbio.core.alignment.template.Profile<S,C>	Alignments.getProgressiveAlignment(GuideTree<S,C> tree, Alignments.ProfileProfileAlignerType type, GapPenalty gapPenalty, org.biojava.nbio.core.alignment.template.SubstitutionMatrix<C> subMatrix)	Factory method to run the profile-profile alignments of a progressive multiple sequence alignment concurrently.