MultipleAlignmentDisplay (biojava-structure 6.0.1 API)

java.lang.Object
- org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentDisplay

```
public class MultipleAlignmentDisplay
extends Object
```
Utility functions to generalize the visualization of MultipleAlignments in molecular viewers. The methods return different types of selectors for the aligned residues in the alignment.

Since:

4.2.0

Author:

Andreas Prlic, Aleix Lafita, Spencer Bliven

Constructor Summary

Constructors
Constructor Description

MultipleAlignmentDisplay()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static List<Atom[]>`	`getRotatedAtoms(MultipleAlignment multAln)`	New structures are downloaded if they were not cached in the alignment and they are entirely transformed here with the superposition information in the Multiple Alignment.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - MultipleAlignmentDisplay
```
public MultipleAlignmentDisplay()
```
- Method Detail
  - getRotatedAtoms
```
public static List<Atom[]> getRotatedAtoms(MultipleAlignment multAln)
                                    throws StructureException
```
    New structures are downloaded if they were not cached in the alignment and they are entirely transformed here with the superposition information in the Multiple Alignment.
    
    Parameters:
    
    multAln -
    
    Returns:
    
    list of transformed AtomArrays
    
    Throws:
    
    StructureException