biojava-structure 7.0.1 API
Packages
Package
Description
Classes for the alignment of structures.
Classes related to the implementation of the CE alignment algorithm, here called jCE.
This package deals with the server communication for auto-downloading pre-calculated alignments.
Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT.
Helper classes for structural alignment.
Classes for the pairwise alignment of structures.
Serialization and deserialization for structure alignment results (as AFPChain object) to XML.
Input and Output of Structures
Matrix package for from JAMA
Parsers and API for SCOP, Structural Classification of Proteins.