Uses of Package
org.biojava.bio.alignment

Packages that use org.biojava.bio.alignment
Package
Description
org.biojava.bio.alignment
 
org.biojava.bio.dist
Probability distributions over Alphabets.
org.biojava.bio.dp
HMM and Dynamic Programming Algorithms.
org.biojava.bio.program.phred
Parser for Phred output
org.biojava.bio.search
Interfaces and classes for representing sequence similarity search results.
org.biojava.bio.seq.homol
The classes and interfaces for defining sequence similarity and honology.
org.biojava.bio.seq.impl
Standard in-memory implementations of Sequence and Feature.
org.biojava.bio.seq.io
Classes and interfaces for processing and producing flat-file representations of sequences.
org.biojava.bio.symbol
Representation of the Symbols that make up a sequence, and locations within them.