CELLULAR_COMPONENT
AssemblyExporter
CELL_LINE
AssemblyExporter
CELL_TYPE
AssemblyExporter
CONCAT
AssemblyExporter
CONTEXT_CELLULAR_COMPONENT
AssemblyExporter
CONTEXT_CELL_LINE
AssemblyExporter
CONTEXT_CELL_TYPE
AssemblyExporter
CONTEXT_ORGAN
AssemblyExporter
CONTEXT_SPECIES
AssemblyExporter
CONTEXT_TISSUE_TYPE
AssemblyExporter
CONTROLLER
AssemblyExporter
CausalPrecedence
export
ClassifyAssemblyRelations
classifier
Complex
representations
ComplexEvent
representations
Constraints
sieves
Corpus
corpus
CorpusBuilder
corpus
CorpusOps
SieveEvaluator
CorpusReader
corpus
CrossValidateAssemblyRelationClassifier
classifier
calculateAccuracy
Evaluator
calculatePerformance
Evaluator
causalPredecessors
Assembler
checkArgumentsForResolutions
FeatureExtractor
checkOverlap
AssemblyActions
chunkedDependencyPaths
PathFinder
classifier
relations
AssemblyRelationClassifier
classifierPath
CrossValidateAssemblyRelationClassifier
TrainAssemblyRelationClassifier
SieveUtils
classifierType
AssemblyRelationClassifier
TrainAssemblyRelationClassifier
classify
AssemblyRelationClassifier
classifyCausalPrecedencePairs
SieveUtils
cleanText
AssemblyRow
clf
SieveUtils
clulab
org
columns
AssemblyRow
combinedRBPrecedence
PrecedenceSieves
commands
AssemblyShell
confidence
PrecedenceRelation
EventPair
config
AssemblyShell
RunAnnotationEval
SerializePapersToJSON
ApplyRulesToDocuments
GenerateRBSieveScoreFiles
RunRBSieveAnalysis
SieveEvaluator
ClassifyAssemblyRelations
CrossValidateAssemblyRelationClassifier
TrainAssemblyRelationClassifier
CorpusBuilder
AkkaServerConfig
AssemblyServer
Service
SieveUtils
configHost
AkkaServerConfig
configPort
AkkaServerConfig
contains
Complex
containsFamily
ExportFilters
containsID
Complex
ComplexEvent
EntityEventRepresentation
SimpleEntity
SimpleEvent
contextConfig
AssemblyShell
contextEngineParams
AssemblyShell
contextEngineType
AssemblyShell
contextFromEvidence
AssemblyRow
controlled
ComplexEvent
controlledHash
ComplexEvent
controlledPointers
Activation
ComplexEvent
Regulation
controller
AssemblyRow
EERDescription
ComplexEvent
controllerHash
ComplexEvent
controllerPointers
Activation
ComplexEvent
Regulation
copy
EventPair
coref
EventPair
EntityEventRepresentation
corpus
ApplyRulesToDocuments
RunRBSieveAnalysis
relations
BuildCorpus
BuildCorpusWithRedundancies
corpusDir
RunRBSieveAnalysis
createComplexWithID
AssemblyManager
createController
AssemblyExporter
createDestination
AssemblyExporter
createEvidenceForCPR
SieveUtils
createInput
AssemblyExporter
createOutput
AssemblyExporter
createSimpleEntity
AssemblyManager
createSimpleEntityText
AssemblyExporter
createSimpleEntityWithID
AssemblyManager
createSource
AssemblyExporter
createTranslocationArgument
AssemblyExporter
crossValidate
Evaluator
crossesPhraseBoundary
AssemblyActions