AssemblyManager

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. val DEFAULT_CONFIDENCE: Double

   

5. def apply(mns: Seq[Mention]): AssemblyManager

   

   Instantiate AssemblyManager and track the provided Mentions

   Instantiate AssemblyManager and track the provided Mentions

   mns

   a sequence of Odin Mentions

   returns

   an AssemblyManager

6. def apply(): AssemblyManager

   

7. final def asInstanceOf[T0]: T0

   

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8. def clone(): AnyRef

   

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   protected[java.lang]

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9. final def eq(arg0: AnyRef): Boolean

   

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10. def equals(arg0: Any): Boolean

    

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11. def finalize(): Unit

    

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    protected[java.lang]

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    @throws( classOf[java.lang.Throwable] )

12. def getAllThemes(m: Mention): Seq[Mention]

    

    Retrieves all themes from a Mention

    Retrieves all themes from a Mention

    m

    an Odin Mention

    returns

    a Seq[Mention] produced by a flattening of all values corresponding to theme* keys

13. final def getClass(): Class[_]

    

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14. def getInputEntities(eer: EntityEventRepresentation): Set[Entity]

    

    Retrieve the set of input entities from an eer

    Retrieve the set of input entities from an eer

    eer

    an EntityEventRepresentation

    returns

    a set of Entity-type EERs

15. def getResolvedForm(m: Mention): CorefMention

    

    Get antecedent if present.

    Get antecedent if present. Otherwise return the CorefMntion as-is.
    

    Used to retrieve the appropriate features of a mention's antecedent.

    m

    an Odin Mention

    returns

    a org.clulab.reach.mentions.CorefMention (possibly cm)

16. def hasNegation(m: Mention): Boolean

    

    Check if mention is negated

17. def hashCode(): Int

    

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18. def involvesCoreference(m: Mention): Boolean

    

    Checks whether a mention involves a corefence resolution

    Checks whether a mention involves a corefence resolution

    m

    an Odin Mention

19. final def isInstanceOf[T0]: Boolean

    

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20. def isValidMention(mention: Mention): Boolean

    

    Checks to see if the mention can be safely handled by the AssemblyManager Currently Sites are not stored in the LUTs, though they can appear as part of a modification (see the PTM AssemblyModification for an example)

    Checks to see if the mention can be safely handled by the AssemblyManager Currently Sites are not stored in the LUTs, though they can appear as part of a modification (see the PTM AssemblyModification for an example)

    mention

    an Odin Mention

    returns

    true if the mention can be safely handled by the manager; false otherwise

21. def loadFrom(fileName: String): AssemblyManager

    

22. def loadFrom(f: File): AssemblyManager

    

23. final def ne(arg0: AnyRef): Boolean

    

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24. val negative: String

    

25. final def notify(): Unit

    

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26. final def notifyAll(): Unit

    

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27. val positive: String

    

28. final def synchronized[T0](arg0: ⇒ T0): T0

    

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29. def toString(): String

    

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30. val unknown: String

    

31. final def wait(): Unit

    

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32. final def wait(arg0: Long, arg1: Int): Unit

    

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33. final def wait(arg0: Long): Unit

    

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