Class/Object

org.clulab.reach.export.cmu

CMUExporter

Related Docs: object CMUExporter | package cmu

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class CMUExporter extends AssemblyExporter

Yet another tabular format This follows the specification from CMU, to integrate nicely with the DyCE model Created by mihais on 11/23/16.

Linear Supertypes
AssemblyExporter, LazyLogging, AnyRef, Any
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Inherited
  1. CMUExporter
  2. AssemblyExporter
  3. LazyLogging
  4. AnyRef
  5. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new CMUExporter(manager: AssemblyManager)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. val EERLUT: Map[Int, String]

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    Definition Classes
    AssemblyExporter

  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. def createController(eer: EntityEventRepresentation): String

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    Definition Classes
    AssemblyExporter

  8. def createDestination(eer: EntityEventRepresentation): String

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    Definition Classes
    AssemblyExporter

  9. def createInput(eer: EntityEventRepresentation, mods: String): String

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    Definition Classes
    AssemblyExporter

  10. def createMechanismType(eer: EntityEventRepresentation): String

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  11. def createNestedControllers(eer: EntityEventRepresentation): (List[String], List[String])

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  12. def createOutput(eer: EntityEventRepresentation, mods: String): String

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    Definition Classes
    AssemblyExporter

  13. def createSimpleEntityText(entity: SimpleEntity): String

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    Definition Classes
    AssemblyExporter

  14. def createSource(eer: EntityEventRepresentation): String

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    Definition Classes
    AssemblyExporter

  15. def createTranslocationArgument(eer: EntityEventRepresentation, name: String): String

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    Definition Classes
    AssemblyExporter

  16. val distinctEERS: Set[EER]

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    Definition Classes
    AssemblyExporter

  17. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  18. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  19. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  20. def findSimpleEventControlled(event: Mention): Option[Mention]

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  21. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  22. def getRows: Seq[_ <: AssemblyRow]

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    Definition Classes
    CMUExporter → AssemblyExporter

  23. def getText(entity: SimpleEntity): String

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    Definition Classes
    AssemblyExporter

  24. val grounding2Text: Map[GroundingID, String]

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    Definition Classes
    AssemblyExporter

  25. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  26. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  27. lazy val logger: Logger

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    Attributes
    protected
    Definition Classes
    LazyLogging

  28. val manager: AssemblyManager

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    Definition Classes
    AssemblyExporter

  29. def mkEventID(eer: EntityEventRepresentation): String

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    Definition Classes
    AssemblyExporter

  30. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  31. final def notify(): Unit

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    Definition Classes
    AnyRef

  32. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  33. def precededBy(eer: EntityEventRepresentation): Set[String]

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    Definition Classes
    AssemblyExporter

  34. def reportError(ce: ComplexEvent, c: EntityEventRepresentation): String

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    Definition Classes
    AssemblyExporter

  35. def rowsToString(cols: Seq[String], sep: String, rowFilter: (Seq[AssemblyRow]) ⇒ Seq[AssemblyRow]): String

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    Definition Classes
    AssemblyExporter

  36. def rowsWithOutputIDProblems(rows: Seq[AssemblyRow]): Seq[AssemblyRow]

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    Definition Classes
    AssemblyExporter

  37. def rowsWithPrecededByIDProblems(rows: Seq[AssemblyRow]): Seq[AssemblyRow]

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    Definition Classes
    AssemblyExporter

  38. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  39. def toString(): String

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    Definition Classes
    AnyRef → Any

  40. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  41. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  42. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  43. def writeRows(f: File, cols: Seq[String], sep: String, rowFilter: (Seq[AssemblyRow]) ⇒ Seq[AssemblyRow]): Unit

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    Definition Classes
    AssemblyExporter

Inherited from AssemblyExporter

Inherited from LazyLogging

Inherited from AnyRef

Inherited from Any

Ungrouped