Class

org.clulab.reach.export.fries

FriesOutput

Related Doc: package fries

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class FriesOutput extends JsonOutputter with LazyLogging

Defines classes and methods used to build and output the FRIES format. Written by: Mihai Surdeanu and Tom Hicks. Last Modified: Deduplicate alternate candidate groundings.

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LazyLogging, JsonOutputter, AnyRef, Any
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Inherited
  1. FriesOutput
  2. LazyLogging
  3. JsonOutputter
  4. AnyRef
  5. Any
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Visibility
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Instance Constructors

  1. new FriesOutput()

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Type Members

  1. type CtxIDed = HashMap[ContextMap, String]

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  2. type IDed = HashMap[Mention, String]

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  6. val contextIdCntr: IncrementingId

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    Attributes
    protected
  7. val contextNameMap: Map[String, String]

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  8. val entityIdCntr: IncrementingId

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    Attributes
    protected
  9. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  10. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  11. val eventIdCntr: IncrementingId

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    Attributes
    protected
  12. val eventsDone: Set[Mention]

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  13. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  14. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  15. def hashCode(): Int

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    Definition Classes
    AnyRef → Any
  16. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  17. val linkIdCntr: IncrementingId

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    Attributes
    protected
  18. lazy val logger: Logger

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    Attributes
    protected
    Definition Classes
    LazyLogging
  19. def makeModels(paperId: String, allMentions: Seq[Mention], paperPassages: Seq[FriesEntry], startTime: Date, endTime: Date, assemblyApi: Option[Assembler] = None): (PropMap, PropMap, PropMap, Option[PropMap])

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    Make and return the Sentence, Entity, Event, and (optionally) Assembly data models.

  20. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  21. final def notify(): Unit

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    Definition Classes
    AnyRef
  22. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  23. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  24. def toJSON(paperId: String, allMentions: Seq[Mention], paperPassages: Seq[FriesEntry], startTime: Date, endTime: Date, outFilePrefix: String): String

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    Returns the given mentions in the Fries JSON format, as one big string.

    Returns the given mentions in the Fries JSON format, as one big string. The normally separate representations for sentences, entities, and events are combined and returned as a single JSON string with corresponding top-level fields.

    Definition Classes
    FriesOutputJsonOutputter
  25. def toJSON(paperId: String, allMentions: Seq[Mention], nxmldoc: NxmlDocument, startTime: Date, endTime: Date, outFilePrefix: String): String

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    Returns the given mentions in some JSON-based format, as one big string.

    Returns the given mentions in some JSON-based format, as one big string. Alternate interface: takes document and extracts passages to output mentions. The processing start and stop date/times are given. The output filename prefix is provided for use by the generator routines, as needed.

    Definition Classes
    JsonOutputter
  26. def toString(): String

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    Definition Classes
    AnyRef → Any
  27. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  28. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  29. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  30. def writeJSON(paperId: String, allMentions: Seq[Mention], paperPassages: Seq[FriesEntry], startTime: Date, endTime: Date, outFilePrefix: String, assemblyApi: Assembler): Unit

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    Writes the given mentions to output files in Fries JSON format.

    Writes the given mentions to output files in Fries JSON format. Separate output files are written for sentences, links, entities, and events. Each output file is prefixed with the given prefix string.

    Definition Classes
    FriesOutputJsonOutputter
  31. def writeJSON(paperId: String, allMentions: Seq[Mention], paperPassages: Seq[FriesEntry], startTime: Date, endTime: Date, outFilePrefix: String): Unit

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    Writes the given mentions to output files in Fries JSON format.

    Writes the given mentions to output files in Fries JSON format. Separate output files are written for sentences, entities, and events. Each output file is prefixed with the given prefix string.

    Definition Classes
    FriesOutputJsonOutputter
  32. def writeJSON(paperId: String, allMentions: Seq[Mention], nxmldoc: NxmlDocument, startTime: Date, endTime: Date, outFilePrefix: String): Unit

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    Definition Classes
    JsonOutputter

Inherited from LazyLogging

Inherited from JsonOutputter

Inherited from AnyRef

Inherited from Any

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