Object

org.clulab.reach

PaperReader

Related Doc: package reach

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object PaperReader extends LazyLogging

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Type Members

  1. type Dataset = Map[PaperId, Vector[Mention]]

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  2. type PaperId = String

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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    @throws( ... )
  6. val config: Config

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  7. val contextConfig: ConfigObject

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  8. val contextEngineParams: Map[String, String]

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  9. val contextEngineType: context.ContextEngineFactory.Engine.Value

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  10. val dsvReader: DSVParser

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  11. final def eq(arg0: AnyRef): Boolean

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  12. def equals(arg0: Any): Boolean

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  13. val fileEncoding: String

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  14. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )
  15. final def getClass(): Class[_]

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  16. def getContents(file: File): String

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  17. def getEntryFromPaper(fileName: String): FriesEntry

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  18. def getEntryFromPaper(file: File): FriesEntry

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    Get a single FriesEntry representing a paper

    Get a single FriesEntry representing a paper

    returns

    FriesEntry

  19. def getMentionsFromEntry(entry: FriesEntry): Vector[Mention]

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  20. def getMentionsFromPaper(file: File): Vector[Mention]

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  21. def getMentionsFromText(text: String): Seq[Mention]

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    Get mentions from text

  22. def hashCode(): Int

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  23. val ignoreSections: Buffer[String]

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  24. final def isInstanceOf[T0]: Boolean

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  25. lazy val logger: Logger

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  26. final def ne(arg0: AnyRef): Boolean

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  27. final def notify(): Unit

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  28. final def notifyAll(): Unit

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  29. val nxmlReader: NxmlReader

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  30. def readPaper(file: File): (String, Vector[Mention])

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    Produces Mentions from either a .nxml or .csv/.tsv paper using NxmlReader or DSVParser and ReachSystem

    Produces Mentions from either a .nxml or .csv/.tsv paper using NxmlReader or DSVParser and ReachSystem

    file

    a File with either the .csv, .tsv, or .nxml extension

    returns

    (PaperID, Mentions)

  31. def readPapers(dir: File): Dataset

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    Produces Dataset from a directory of nxml and csv papers.

    Produces Dataset from a directory of nxml and csv papers.

    dir

    a File (directory) of nxml and csv papers

    returns

    a Dataset (PaperID -> Mentions)

  32. def readPapers(path: String): Dataset

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    Produces Dataset from a directory of nxml and csv papers

    Produces Dataset from a directory of nxml and csv papers

    path

    a directory of nxml and csv papers

    returns

    a Dataset (PaperID -> Mentions)

  33. lazy val rs: ReachSystem

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  34. final def synchronized[T0](arg0: ⇒ T0): T0

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  35. val threadLimit: Int

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  36. def toString(): String

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  37. final def wait(): Unit

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    @throws( ... )
  38. final def wait(arg0: Long, arg1: Int): Unit

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  39. final def wait(arg0: Long): Unit

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Inherited from LazyLogging

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