ReachIMKBMentionLookups

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. val AdHocIMKBFactory: AdHocIMKBFactory

   

   Single factory instance to generate AdHoc IMKB classes.

5. val ContextCellLine: IMKBMentionLookup

   

6. val ContextCellLine2: IMKBMentionLookup

   

7. val ContextCellType: IMKBMentionLookup

   

8. val ContextOrgan: IMKBMentionLookup

   

9. val ContextSpecies: IMKBMentionLookup

   

10. val ContextTissueType: IMKBMentionLookup

    

11. val ModelGendCellLocation: IMKBMentionLookup

    

12. val ModelGendChemical: IMKBMentionLookup

    

13. val ModelGendProteinAndFamily: IMKBMentionLookup

    

14. val StaticBioProcess: IMKBMentionLookup

    

15. val StaticCellLocation: IMKBMentionLookup

    

16. val StaticCellLocation2: IMKBMentionLookup

    

17. val StaticChemical: IMKBMentionLookup

    

18. val StaticDrug: IMKBMentionLookup

    

19. val StaticProtein: IMKBMentionLookup

    

20. val StaticProteinComplex: IMKBMentionLookup

    

21. val StaticProteinFamily: IMKBMentionLookup

    

22. val StaticProteinFamily0: IMKBMentionLookup

    

23. val StaticProteinFamily2: IMKBMentionLookup

    

24. val TsvIMKBFactory: TsvIMKBFactory

    

    Single factory instance to generate Tsv IMKB classes.

25. final def asInstanceOf[T0]: T0

    

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26. def clone(): AnyRef

    

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27. def contextCellLine2KBML: IMKBMentionLookup

    

    KB accessor to resolve alternate cell lines via a context KB.

28. def contextCellLineKBML: IMKBMentionLookup

    

    KB accessor to resolve cell lines via a context KB.

29. def contextCellTypeKBML: IMKBMentionLookup

    

    KB accessor to resolve cell types via a context KB.

30. def contextOrganKBML: IMKBMentionLookup

    

    KB accessor to resolve organ names via a context KB.

    KB accessor to resolve organ names via a context KB. Uses alternate key lookups for organ to cell type inference.

31. def contextSpeciesKBML: IMKBMentionLookup

    

    KB accessor to resolve species names via a context KB.

32. def contextTissueTypeKBML: IMKBMentionLookup

    

    KB accessor to resolve tissue type names via context KB.

33. final def eq(arg0: AnyRef): Boolean

    

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34. def equals(arg0: Any): Boolean

    

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35. def finalize(): Unit

    

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36. def gendCellLocationKBML: IMKBMentionLookup

    

    KB accessor to resolve subcellular location names via KBs generated from the BioPax model.

37. def gendChemicalKBML: IMKBMentionLookup

    

    KB accessor to resolve small molecule (chemical) names via KBs generated from the BioPax model.

38. def gendProteinFamilyKBML: IMKBMentionLookup

    

    KB accessor to resolve protein family names via KBs generated from the BioPax model.

39. def gendProteinKBML: IMKBMentionLookup

    

    KB accessor to resolve protein names via KBs generated from the BioPax model.

40. final def getClass(): Class[_]

    

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41. def hashCode(): Int

    

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42. final def isInstanceOf[T0]: Boolean

    

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43. final def ne(arg0: AnyRef): Boolean

    

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44. final def notify(): Unit

    

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45. final def notifyAll(): Unit

    

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46. def staticBioProcessKBML: IMKBMentionLookup

    

    KB accessor to resolve bio process names via static KB.

47. def staticCellLocation2KBML: IMKBMentionLookup

    

    KB accessor to resolve alternate subcellular location names via static KB.

48. def staticCellLocationKBML: IMKBMentionLookup

    

    KB accessor to resolve subcellular location names via static KB.

49. def staticChemicalKBML: IMKBMentionLookup

    

    KB accessor to resolve small molecule (chemical) names via static KB.

50. def staticDrugKBML: IMKBMentionLookup

    

    KB accessor to resolve small molecule (drug) names via static KB.

51. def staticMetaboliteKBML: IMKBMentionLookup

    

    KB accessor to resolve small molecule (metabolite) names via static KB.

52. def staticProteinComplexKBML: IMKBMentionLookup

    

    KB accessor to resolve protein complex names via static KB.

53. def staticProteinFamily0KBML: IMKBMentionLookup

    

    KB accessor to resolve protein family names via static KB.

54. def staticProteinFamily2KBML: IMKBMentionLookup

    

    KB accessor to resolve protein family names via static KB.

55. def staticProteinFamilyKBML: IMKBMentionLookup

    

    KB accessor to resolve protein family names via static KB.

56. def staticProteinKBML: IMKBMentionLookup

    

    KB accessor to resolve protein names via static KB.

57. final def synchronized[T0](arg0: ⇒ T0): T0

    

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58. def toString(): String

    

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59. final def wait(): Unit

    

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60. final def wait(arg0: Long, arg1: Int): Unit

    

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61. final def wait(arg0: Long): Unit

    

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