ReachKBKeyTransforms

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. def applyAllTransforms(transformFns: KeyTransforms, text: String): KeyCandidates

   

   Apply the given key transforms to the given string, returning a (possibly empty) sequence of potential key strings.

   Apply the given key transforms to the given string, returning a (possibly empty) sequence of potential key strings.

   Definition Classes

   KBKeyTransforms

5. def applyTransform(transformFn: KeyTransformFn, texts: Seq[String]): KeyCandidates

   

   Apply the given transform function to the given texts, return any non-empty result strings.

   Apply the given transform function to the given texts, return any non-empty result strings.

   Definition Classes

   KBKeyTransforms

6. def applyTransform(transformFn: KeyTransformFn, text: String): KeyCandidates

   

   Apply the given transform function to the given text, return any non-empty result strings.

   Apply the given transform function to the given text, return any non-empty result strings.

   Definition Classes

   KBKeyTransforms

7. final def asInstanceOf[T0]: T0

   

   Definition Classes

   Any

8. def canonicalKT(text: String): KeyCandidates

   

   A key transform which implements a canonicalization function for Strings.

9. def canonicalKey(text: String): String

   

   Canonicalize the given text string into a key for both storage and lookup.

10. def clone(): AnyRef

    

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    protected[java.lang]

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11. final def eq(arg0: AnyRef): Boolean

    

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12. def equals(arg0: Any): Boolean

    

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13. def finalize(): Unit

    

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    protected[java.lang]

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    @throws( classOf[java.lang.Throwable] )

14. final def getClass(): Class[_]

    

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15. def hashCode(): Int

    

    Definition Classes

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16. def identityKT(text: String): KeyCandidates

    

    A key transform which implements an Identity function for Strings.

    A key transform which implements an Identity function for Strings.

    Definition Classes

    KBKeyTransforms

17. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

18. def lowercaseKT(text: String): KeyCandidates

    

    A key transform which implements a minimal canonicalization function for Strings.

    A key transform which implements a minimal canonicalization function for Strings.

    Definition Classes

    KBKeyTransforms

19. final def ne(arg0: AnyRef): Boolean

    

    Definition Classes

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20. final def notify(): Unit

    

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21. final def notifyAll(): Unit

    

    Definition Classes

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22. def stripAllKeysSuffixes(text: String): String

    

    Remove suffixes from all keys candidates.

23. def stripAllSuffixes(suffixes: Seq[String], text: String): String

    

    Try to remove all of the suffixes in the given set from the given text.

    Try to remove all of the suffixes in the given set from the given text.

    Definition Classes

    KBKeyTransforms

24. def stripAllSuffixesKT(suffixes: Seq[String], text: String): KeyCandidates

    

    Try to remove all of the suffixes in the given set from the given text.

    Try to remove all of the suffixes in the given set from the given text.

    Definition Classes

    KBKeyTransforms

25. def stripFamilyPostAttributivesKT(text: String): KeyCandidates

    

    Return the portion of the text string minus one of the protein family postpositional attributives, if found in the given text string, else return no candidates.

26. def stripGeneNameAffixesKT(text: String): KeyCandidates

    

    Try to remove some specific affixes from the given hyphenated text and return a dash-concatenated string of non-affixes, or no candidates if no affixes removed.

27. def stripMutantProteinKT(text: String): KeyCandidates

    

    Return the portion of the text string before a trailing mutation phrase, if found in the given text string, else return no candidates.

28. def stripOrganPostAttributivesKT(text: String): KeyCandidates

    

    Return the portion of the text string minus one of the organ-cell-type suffixes, if found in the given text string, else return no candidates.

29. def stripPTMPrefixesKT(text: String): KeyCandidates

    

    Return the portion of the text string minus any of the PTM-related prefixes, if found in the given text string, else return no candidates.

30. def stripProteinDomainKT(text: String): KeyCandidates

    

    Check for hyphen-separated strings where the RHS is a protein domain specification.

    Check for hyphen-separated strings where the RHS is a protein domain specification. Extract and return the candidate text portion, else return no candidates.

31. def stripProteinPostAttributivesKT(text: String): KeyCandidates

    

    Return the portion of the text string minus one of the protein postpositional attributives, if found in the given text string, else return no candidates.

32. def stripSuffixByPattern(pattern: Regex, text: String): String

    

    Remove suffix(es) matching given pattern from text, return matched part or text.

    Remove suffix(es) matching given pattern from text, return matched part or text. Trims matching part or text as a side effect.

33. final def synchronized[T0](arg0: ⇒ T0): T0

    

    Definition Classes

    AnyRef

34. def toKeyCandidates(candidates: Seq[String]): KeyCandidates

    

    Transform the given sequence of strings into (a possibly empty) key candidates.

    Transform the given sequence of strings into (a possibly empty) key candidates.

    Definition Classes

    KBKeyTransforms

35. def toKeyCandidates(text: String): KeyCandidates

    

    Transform the given string into (a possibly empty) key candidates.

    Transform the given string into (a possibly empty) key candidates.

    Definition Classes

    KBKeyTransforms

36. def toString(): String

    

    Definition Classes

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37. final def wait(): Unit

    

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38. final def wait(arg0: Long, arg1: Int): Unit

    

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39. final def wait(arg0: Long): Unit

    

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