Labeler
fragmenter
LeadingMutationPat
ReachKBKeyTransforms
LinearSelector
coref
LinguisticPolarityEngine
polarity
Link
mentions
Links
coref
label
Annotation BinaryAttribute Equivalence Event MultiValueAttribute Normalization Relation TextBound Modification Mutant PTM SimpleModification
labelTriggersMap
Labeler
left
ConversionUtils
lemmasForPolarity
RRNInput
list1
reguTestZ
list2
reguTestZ
list3
reguTestZ
listContextKBs
ReachContextKBLister
loadAnnotations
PolarityDatasetPreprocessor
loadModelEval
DeepLearningPolarityClassifier
loadRegulationTypeKeywords
RegulationHandler
locationDiff
ConversionUtils
logger
NxmlIndexer NxmlSearcher BratUtils
lookup
InMemoryKB
lookupByASpecies
InMemoryKB
lookupBySpecies
InMemoryKB
lookupHuman
InMemoryKB
lookupNoSpecies
InMemoryKB
lookupNsId
InMemoryKB
lookupNsIds
InMemoryKB
loss
DeepLearningPolarityClassifier
lowercaseKT
KBKeyTransforms
lstmClassifier
ManualCheckModel TrainDeepLearningModel