ReachSystem

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. val actions: DarpaActions

   

5. def allRules: String

   

   returns string with all rules used by the system

6. final def asInstanceOf[T0]: T0

   

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7. def clone(): AnyRef

   

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8. val contextRules: String

   

9. def displayEntitySummary(ents: Seq[BioMention], h: String): Unit

   

10. val entityEngine: ExtractorEngine

    

11. val entityLookup: ReachEntityLookup

    

12. val entityRules: String

    

13. final def eq(arg0: AnyRef): Boolean

    

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14. def equals(arg0: Any): Boolean

    

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15. val eventEngine: ExtractorEngine

    

16. val eventRules: String

    

17. def extractEntitiesFrom(docs: Seq[Document]): Seq[Seq[BioMention]]

    

18. def extractEntitiesFrom(doc: Document): Seq[BioMention]

    

19. def extractEventsFrom(doc: Document, entities: Seq[BioMention]): Seq[BioMention]

    

20. def extractFrom(doc: Document): Seq[BioMention]

    

21. def extractFrom(text: String, docId: String, chunkId: String): Seq[BioMention]

    

22. def extractFrom(entries: Seq[FriesEntry], documents: Seq[Document]): Seq[BioMention]

    

23. def extractFrom(entries: Seq[FriesEntry]): Seq[BioMention]

    

24. def extractFrom(doc: Document, nxmlDoc: Option[NxmlDocument]): Seq[BioMention]

    

25. def extractFrom(nxml: NxmlDocument): Seq[BioMention]

    

26. def extractFrom(entry: FriesEntry): Seq[BioMention]

    

27. def finalize(): Unit

    

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28. final def getClass(): Class[_]

    

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29. val grounder: ReachGrounder

    

30. def groupMentionsByDocument(mentions: Seq[BioMention], documents: Seq[Document]): Seq[Seq[BioMention]]

    

31. def groupMentionsByStandoff(mentions: Seq[BioMention], nxml: NxmlDocument): Seq[Seq[BioMention]]

    

    group mentions according to their position in the nxml standoff

32. def hashCode(): Int

    

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33. final def isInstanceOf[T0]: Boolean

    

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34. lazy val logger: Logger

    

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35. def mkDoc(nxml: NxmlDocument): Document

    

36. def mkDoc(text: String, docId: String, chunkId: String = ""): Document

    

37. val modificationEngine: ExtractorEngine

    

38. val modificationRules: String

    

39. def mutationsToMentions(mention: BioTextBoundMention): Seq[BioMention]

    

    If the given mention has many mutations attached to it, return a mention for each mutation.

40. final def ne(arg0: AnyRef): Boolean

    

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41. final def notify(): Unit

    

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42. final def notifyAll(): Unit

    

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43. val procAnnotator: BioNLPProcessor

    

44. def resolveCoref(eventsPerDocument: Seq[Seq[BioMention]]): Seq[CorefMention]

    

45. final def synchronized[T0](arg0: ⇒ T0): T0

    

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46. val textPreProc: Preprocess

    

47. def toString(): String

    

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48. final def wait(): Unit

    

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49. final def wait(arg0: Long, arg1: Int): Unit

    

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50. final def wait(arg0: Long): Unit

    

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