Class

org.clulab.reach.grounding

ReachGrounder

Related Doc: package grounding

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class ReachGrounder extends LazyLogging

Class which implements methods to select the best groundings for a sequence of mentions. Written by Tom Hicks. 2/9/2016. Last Modified: Update for replacement of reverse lookups.

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Instance Constructors

  1. new ReachGrounder()

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. def apply(mentions: Seq[BioMention]): Seq[BioMention]

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    Select and apply best grounding choice to a sequence of bio mentions.

  5. final def asInstanceOf[T0]: T0

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  6. def clone(): AnyRef

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  7. val config: Config

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  8. final def eq(arg0: AnyRef): Boolean

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  9. def equals(arg0: Any): Boolean

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  10. def finalize(): Unit

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    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

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  12. def getSpeciesContext(mention: BioMention): Seq[String]

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    Return a possibly empty sequence of NS/ID strings for the given mentions.

  13. def groundArguments(parent: BioMention): Unit

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    Recursively process arguments of given parent mention, possibly setting new context environment.

  14. def groundAsHuman(mention: BioTextBoundMention): Unit

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    Prioritize the Grounding of the given mention as human.

    Prioritize the Grounding of the given mention as human. NB: Mention must be grounded and have more than one candidate.

  15. def groundBySpecies(mention: BioTextBoundMention, context: Seq[String]): Unit

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    Prioritize the grounding for one of the given species NS/IDs strings.

    Prioritize the grounding for one of the given species NS/IDs strings. NB: Mention must be grounded and have more than one candidate.

  16. def groundMention(mention: BioMention, context: Seq[String]): Unit

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    Dispatch the given bio mention for grounding, based on candidates and given species context.

  17. def hashCode(): Int

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  18. final def isInstanceOf[T0]: Boolean

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  19. lazy val logger: Logger

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    protected
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    LazyLogging

  20. val mentionMgr: MentionManager

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  21. final def ne(arg0: AnyRef): Boolean

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  22. final def notify(): Unit

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  23. final def notifyAll(): Unit

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  24. val overrideSpecies: Boolean

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  25. final def synchronized[T0](arg0: ⇒ T0): T0

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  26. def toString(): String

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  27. final def wait(): Unit

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  28. final def wait(arg0: Long, arg1: Int): Unit

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  29. final def wait(arg0: Long): Unit

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Inherited from LazyLogging

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