ReachIMKBMentionLookups

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. val AdHocIMKBFactory: AdHocIMKBFactory

   

   Single factory instance to generate AdHoc IMKB classes.

5. val ContextCellLine: IMKBMentionLookup

   

6. val ContextCellLine2: IMKBMentionLookup

   

7. val ContextCellType: IMKBMentionLookup

   

8. val ContextOrgan: IMKBMentionLookup

   

9. val ContextSpecies: IMKBMentionLookup

   

10. val ContextTissueType: IMKBMentionLookup

    

11. val ModelGendCellLocation: IMKBMentionLookup

    

12. val ModelGendChemical: IMKBMentionLookup

    

13. val ModelGendProteinAndFamily: IMKBMentionLookup

    

14. val StaticBioProcess: IMKBMentionLookup

    

15. val StaticCellLocation: IMKBMentionLookup

    

16. val StaticCellLocation2: IMKBMentionLookup

    

17. val StaticChemical: IMKBMentionLookup

    

18. val StaticChemicalChebi: IMKBMentionLookup

    

19. val StaticDisease: IMKBMentionLookup

    

20. val StaticDrug: IMKBMentionLookup

    

21. val StaticGene: IMKBMentionLookup

    

22. val StaticProtein: IMKBMentionLookup

    

23. val StaticProteinFamily: IMKBMentionLookup

    

24. val StaticProteinFamily2: IMKBMentionLookup

    

25. val StaticProteinFragment: IMKBMentionLookup

    

26. val TsvIMKBFactory: TsvIMKBFactory

    

    Single factory instance to generate Tsv IMKB classes.

27. final def asInstanceOf[T0]: T0

    

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28. def clone(): AnyRef

    

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29. def contextCellLine2KBML: IMKBMentionLookup

    

    KB accessor to resolve alternate cell lines via a context KB.

30. def contextCellLineKBML: IMKBMentionLookup

    

    KB accessor to resolve cell lines via a context KB.

31. def contextCellTypeKBML: IMKBMentionLookup

    

    KB accessor to resolve cell types via a context KB.

32. def contextOrganKBML: IMKBMentionLookup

    

    KB accessor to resolve organ names via a context KB.

    KB accessor to resolve organ names via a context KB. Uses alternate key lookups for organ to cell type inference.

33. def contextSpeciesKBML: IMKBMentionLookup

    

    KB accessor to resolve species names via a context KB.

34. def contextTissueTypeKBML: IMKBMentionLookup

    

    KB accessor to resolve tissue type names via context KB.

35. final def eq(arg0: AnyRef): Boolean

    

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36. def equals(arg0: Any): Boolean

    

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37. def finalize(): Unit

    

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38. def gendCellLocationKBML: IMKBMentionLookup

    

    KB accessor to resolve subcellular location names via KBs generated from the BioPax model.

39. def gendChemicalKBML: IMKBMentionLookup

    

    KB accessor to resolve small molecule (chemical) names via KBs generated from the BioPax model.

40. def gendProteinFamilyKBML: IMKBMentionLookup

    

    KB accessor to resolve protein family names via KBs generated from the BioPax model.

41. def gendProteinKBML: IMKBMentionLookup

    

    KB accessor to resolve protein names via KBs generated from the BioPax model.

42. final def getClass(): Class[_]

    

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43. def hashCode(): Int

    

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44. final def isInstanceOf[T0]: Boolean

    

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45. final def ne(arg0: AnyRef): Boolean

    

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46. final def notify(): Unit

    

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47. final def notifyAll(): Unit

    

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48. def staticBioProcessKBML: IMKBMentionLookup

    

    KB accessor to resolve bio process names via static KB.

49. def staticCellLocation2KBML: IMKBMentionLookup

    

    KB accessor to resolve alternate subcellular location names via static KB.

50. def staticCellLocationKBML: IMKBMentionLookup

    

    KB accessor to resolve subcellular location names via static KB.

51. def staticChemicalKBML: IMKBMentionLookup

    

    KB accessor to resolve small molecule (chemical) names via static KB.

52. def staticChemicalKBMLChebi: IMKBMentionLookup

    

    KB accessor to resolve small molecule (chemical) names via static KB.

53. def staticDiseaseKBML: IMKBMentionLookup

    

    KB accessor to resolve disease names via static KB.

54. def staticDrugKBML: IMKBMentionLookup

    

    KB accessor to resolve small molecule (drug) names via static KB.

55. def staticGeneKBML: IMKBMentionLookup

    

    KB accessor to resolve human gene names via static KB.

56. def staticMetaboliteKBML: IMKBMentionLookup

    

    KB accessor to resolve small molecule (metabolite) names via static KB.

57. def staticProteinFamily2KBML: IMKBMentionLookup

    

    KB accessor to resolve protein family names via static KB.

58. def staticProteinFamilyKBML: IMKBMentionLookup

    

    KB accessor to resolve protein family names via static KB.

59. val staticProteinFamilyOrComplex: IMKBMentionLookup

    

60. def staticProteinFamilyOrComplexKBML: IMKBMentionLookup

    

    KB accessor to resolve protein family names via static KB.

61. def staticProteinFragmentKBML: IMKBMentionLookup

    

    KB accessor to resolve protein fragment names via static KB.

62. def staticProteinKBML: IMKBMentionLookup

    

    KB accessor to resolve protein names via static KB.

63. final def synchronized[T0](arg0: ⇒ T0): T0

    

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64. def toString(): String

    

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65. final def wait(): Unit

    

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66. final def wait(arg0: Long, arg1: Int): Unit

    

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67. final def wait(arg0: Long): Unit

    

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