Class/Object

org.clulab.reach.indexer

NxmlSearcher

Related Docs: object NxmlSearcher | package indexer

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class NxmlSearcher extends AnyRef

Searches the NXML index created by NXML indexer User: mihais Date: 10/19/15 Last Modified: Remove unused processors client refs.

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Instance Constructors

  1. new NxmlSearcher(indexDir: String)

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
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  6. def close(): Unit

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  7. def countDocsContaining(eventDocs: Set[(Int, Float)], token: String): Int

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  8. def docs(ids: Set[(Int, Float)]): Set[(Document, Float)]

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  9. final def eq(arg0: AnyRef): Boolean

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  10. def equals(arg0: Any): Boolean

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  11. def finalize(): Unit

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    @throws( classOf[java.lang.Throwable] )
  12. final def getClass(): Class[_]

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  13. def hashCode(): Int

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  14. val indexDir: String

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  15. def intersection(s1: Set[(Int, Float)], s2: Set[(Int, Float)]): Set[(Int, Float)]

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  16. final def isInstanceOf[T0]: Boolean

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  17. final def ne(arg0: AnyRef): Boolean

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  18. final def notify(): Unit

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  19. final def notifyAll(): Unit

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  20. val reader: DirectoryReader

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  21. def saveDocs(resultDir: String, docIds: Set[(Int, Float)], maxDocs: Int, maxSize: Double = 1E6): Unit

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  22. def saveIds(docs: Set[(Document, Float)]): Unit

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  23. def saveNxml(resultDir: String, docs: Set[(Document, Float)], howManyToSave: Int = 0): Unit

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  24. def search(query: String, totalHits: Int = TOTAL_HITS): Set[(Int, Float)]

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  25. def searchByField(query: String, field: String, analyzer: Analyzer, totalHits: Int = TOTAL_HITS, verbose: Boolean = true): Set[(Int, Float)]

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  26. def searchByIds(ids: Array[String], resultDir: String): Unit

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  27. def searchId(id: String, totalHits: Int = 1): Set[(Int, Float)]

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  28. val searcher: IndexSearcher

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  29. final def synchronized[T0](arg0: ⇒ T0): T0

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  30. def toString(): String

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  31. def union(s1: Set[Int], s2: Set[Int]): Set[Int]

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  32. def useCase(resultDir: String): Unit

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    Use case for Natasa, before the Jan 2016 PI meeting

  33. def useCase4a(resultDir: String): Unit

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  34. def useCase4b(resultDir: String): Unit

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  35. def useCase4c(resultDir: String): Unit

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  36. def useCase4d(resultDir: String): Unit

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  37. def useCaseAFib(resultDir: String, maxDocs: Int): Unit

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    Finds all NXML that contain at least one atrial fibrilation term

  38. def useCaseAnyInteraction(resultDir: String, maxDocs: Int): Unit

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    Finds all NXML that contain at least one biochemical interaction

  39. def useCaseCH(resultDir: String): Unit

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    Use case for childrens health

  40. def useCaseCrop(resultDir: String): Unit

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  41. def useCaseDengue(resultDir: String): Unit

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    Dengue use case

  42. def useCaseFall2017Eval(resultDir: String): Unit

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  43. def useCaseNCD(resultDir: String): Unit

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    Use case for neuro cognitive development

  44. def useCaseNCD2(resultDir: String): Unit

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  45. def useCasePhase3a(resultDir: String): Unit

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    Phase III CMU use case (a)

  46. def useCasePhase3b(resultDir: String): Unit

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    Phase III CMU use case (b)

  47. def useCasePhase3c(resultDir: String): Unit

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    Phase III CMU use case (c) 3/1/2017

  48. def useCasePhase3d(resultDir: String): Unit

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    Phase III May 2017 CMU/UPitt

  49. def useCaseTB(resultDir: String): Unit

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  50. def useCaseUPittJan2018(resultDir: String): Unit

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  51. def vanillaUseCase(query: String, resultDir: String, maxDocs: Int = Int.MaxValue): Unit

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  52. final def wait(): Unit

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    @throws( ... )
  53. final def wait(arg0: Long, arg1: Int): Unit

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  54. final def wait(arg0: Long): Unit

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