BroscoiDriver

final def !=(arg0: Any): Boolean

final def ##(): Int

final def ==(arg0: Any): Boolean

val PapersDir: String

def args: Array[String]

final def asInstanceOf[T0]: T0

def cleanText(m: Mention): String

def clone(): AnyRef

def docFromSerializedFile(filename: String): Document

val ds: DocumentSerializer

final def eq(arg0: AnyRef): Boolean

def equals(arg0: Any): Boolean

val executionStart: Long

def finalize(): Unit

final def getClass(): Class[_]

def getText(fileName: String): String

def hashCode(): Int

final def isInstanceOf[T0]: Boolean

val logger: Logger

def main(args: Array[String]): Unit

def mkOutputName(paper: String, ext: String): String

final def ne(arg0: AnyRef): Boolean

final def notify(): Unit

final def notifyAll(): Unit

val outDir: String

def outputTextBoundMentions(mentions: Seq[BioMention], doc: Document, fos: FileOutputStream): Unit

Ground, then output the given sequence of mentions.

val paperNames: Seq[String]

def processPaper(paper: String): Unit

def processPapers(papers: Seq[String]): Unit

val reach: ReachSystem

final def synchronized[T0](arg0: ⇒ T0): T0

def toString(): String

final def wait(): Unit

final def wait(arg0: Long, arg1: Int): Unit

final def wait(arg0: Long): Unit

def delayedInit(body: ⇒ Unit): Unit