edu.arizona.sista.reach.grounding
LocalKeyTransforms
Related Doc:
package grounding
The set of words to remove from all keys to create a lookup key.
The set of words to remove from all keys to create a lookup key.
Filename of the auxiliary biological processes file.
Filename of the auxiliary biological processes file.
Filename of the auxiliary cellular location file.
Filename of the auxiliary cellular location file.
Filename of the auxiliary small molecule (chemical) file.
Filename of the auxiliary small molecule (chemical) file.
Filename of the auxiliary small molecule (metabolite) file.
Filename of the auxiliary small molecule (metabolite) file.
Filename of the auxiliary protein family file.
Filename of the auxiliary protein family file.
Filename of the auxiliary protein file.
Filename of the auxiliary protein file.
Filename of the auxiliary protein file.
Filename of the auxiliary protein file.
The set of words to remove from a key to create a protein family lookup key.
The set of words to remove from a key to create a protein family lookup key.
Filename of the cellular location file generated by the entity checker.
Filename of the cellular location file generated by the entity checker.
Prefix string for cellular location IDs generated by the entity checker.
Prefix string for cellular location IDs generated by the entity checker.
Filename of the small molecule file generated by the entity checker.
Filename of the small molecule file generated by the entity checker.
Prefix string for small molecule IDs generated by the entity checker.
Prefix string for small molecule IDs generated by the entity checker.
Filename of the protein/family file generated by the entity checker.
Filename of the protein/family file generated by the entity checker.
Prefix string for protein/family IDs generated by the entity checker.
Prefix string for protein/family IDs generated by the entity checker.
The set of words to remove from the text to create a lookup key.
The set of words to remove from the text to create a lookup key.
File Path to the directory which holds the entity knowledge bases.
File Path to the directory which holds the entity knowledge bases.
Resource Path to the directory which holds the entity knowledge bases.
Resource Path to the directory which holds the entity knowledge bases.
The set of characters to remove from the text to create a lookup key.
The set of characters to remove from the text to create a lookup key.
Filename of the manually maintained cellular location file.
Filename of the manually maintained cellular location file.
Filename of the manually maintained small molecule file.
Filename of the manually maintained small molecule file.
Filename of the manually maintained protein family file.
Filename of the manually maintained protein family file.
Filename of the manually maintained protein file.
Filename of the manually maintained protein file.
The set of words to remove from a key to create a protein lookup key.
The set of words to remove from a key to create a protein lookup key.
Filename of the static cellular location file.
Filename of the static cellular location file.
Filename of the static small molecule (chemical) file.
Filename of the static small molecule (chemical) file.
Filename of the static small molecule (chemical) file.
Filename of the static small molecule (chemical) file.
Filename of the static protein family file.
Filename of the static protein family file.
Filename of the static protein file.
Filename of the static protein file.
Filename of the static tissue type file.
Filename of the static tissue type file.
List of transform methods to apply for alternate Protein lookups.
Return the portion of the key string minus one of the protein family suffixes, if found in the given key string, else return the key unchanged.
Return the portion of the key string before a trailing mutation phrase, if found in the given key string, else return the key unchanged.
Return the portion of the key string minus one of the protein suffixes, if found in the given key string, else return the key unchanged.
Return the protein portion of a mutatation-protein string, if found in the given key string, else return the key unchanged.
Specialized lookup key transformation methods, for writing local KB accessors. Written by Tom Hicks. 5/21/2015. Last Modified: Correct bad regex in mutant stripper. Add phosphorylation/mutant stripper.