edu.arizona.sista.reach

ner

package ner

Created by gus

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Type Members

  1. type Lines = Seq[Array[String]]

  2. case class Syns(label: String, lines: Lines) extends Product with Serializable

  3. type TemplateMap = Map[String, String]

Value Members

  1. val IGNORE_THESE: Seq[String]

  2. val KBLUT: Map[String, Seq[String]]

  3. object NERInputGenerator

    Methods for creating Trie-based NER system input from kb files

  4. object NERInputWriter extends App

    KB files => tokenized input files for Trie-based NER the only command line parameter is the path to the desired output folder

  5. object RuleGenerator

    Generate odin-style entity rules (token-based) from KB files Use at your own peril!

  6. object RuleWriter extends App

  7. val SpeciesLUT: Map[String, Seq[String]]

  8. def filterLines(f: File): Seq[String]

    Only consider lines that match the set of valid species labels (defined in SpeciesLUT).

    Only consider lines that match the set of valid species labels (defined in SpeciesLUT).

    f

    a KB File

    returns

    the valid lines pertaining to the specified species

  9. val logger: Logger

  10. def mkLabelRepresentation(kb: String): String

  11. val preprocessor: BioNLPProcessor

  12. val speciesOfInterest: Seq[String]

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