MapTargets
Timers
MarkDuplicatesInDriver
Timers
MarkReads
Timers
Match
MdTagEvent
MdTag
models
MdTagEvent
models
Mismatch
MdTagEvent
MultisampleAvroGenomicRDD
rdd
MultisampleGenomicRDD
rdd
makeFormatter
AnySAMInFormatterCompanion
BAMInFormatter
SAMInFormatter
makeIterator
FullOuterShuffleRegionJoin
InnerShuffleRegionJoin
InnerShuffleRegionJoinAndGroupByLeft
LeftOuterShuffleRegionJoin
RightOuterShuffleRegionJoin
RightOuterShuffleRegionJoinAndGroupByLeft
ShuffleRegionJoin
makeWriter
AnySAMInFormatter
mapq
AlignmentRecordField
mapq0Reads
VariantCallingAnnotationsField
markDuplicates
AlignmentRecordRDD
matches
MdTag
mateAlignmentEnd
AlignmentRecordField
mateAlignmentStart
AlignmentRecordField
mateContigName
AlignmentRecordField
mateMapped
AlignmentRecordField
mateNegativeStrand
AlignmentRecordField
mateOpt
ReferenceRegion
md5
SequenceRecord
mdTag
IncorrectMDTagException
RichAlignmentRecord
merge
ReferenceRegion
mergeFragments
NucleotideContigFragmentRDD
messages
TranscriptEffectField
minReadDepth
GenotypeField
mismatchedBase
MdTag
mismatches
MdTag
mismatchingPositions
AlignmentRecordField
models
adam
moveAlignment
MdTag
mqRankSum
VariantCallingAnnotationsField