TagType
models
Timers
instrumentation
TranscriptEffectField
projections
TrimCigar
Timers
TrimLowQualityInDriver
Timers
TrimMDTag
Timers
TrimRead
Timers
TrimReadsInDriver
Timers
TwoBitFile
util
TwoBitFileSerializer
util
TypeVal
TagType
tag
Attribute
tagType
Attribute
tags
RichAlignmentRecord
target
FeatureField
thousandGenomes
VariantAnnotationField
timerName
InstrumentedADAMBAMOutputFormat
InstrumentedADAMBAMOutputFormatHeaderLess
InstrumentedADAMCRAMOutputFormat
InstrumentedADAMCRAMOutputFormatHeaderLess
InstrumentedADAMSAMOutputFormat
InstrumentedADAMSAMOutputFormatHeaderLess
toADAMContig
SequenceRecord
toCoverage
FeatureRDD
AlignmentRecordRDD
toEnd
ReferenceRegion
toFeature
Coverage
toFeatureRDD
CoverageRDD
toFragments
AlignmentRecordRDD
toGenotypeRDD
VariantContextRDD
toHammerlabRegion
ReferenceRegion
toMetadata
RecordGroup
toReads
NucleotideContigFragmentRDD
FragmentRDD
toSAMReadGroupRecord
RecordGroup
toSAMSequenceDictionary
SequenceDictionary
toSAMSequenceRecord
SequenceRecord
toSamples
RecordGroupDictionary
toString
Attribute
MdTag
RecordGroupDictionary
SequenceDictionary
SequenceRecord
TypeVal
GenomicPositionPartitioner
toVariantAnnotationRDD
VariantContextRDD
toVariantContextRDD
GenotypeRDD
toVariantRDD
VariantContextRDD
total
TranscriptEffectField
transcriptEffects
VariantAnnotationField
transcriptHgvs
TranscriptEffectField
transcriptId
FeatureField
transform
GenomicRDD