org.bdgenomics.adam.models

OptionalRegionOrdering

object OptionalRegionOrdering extends OptionalReferenceOrdering[ReferenceRegion]

A sort order that orders all given regions lexicographically by contig and numerically within a single contig, and puts all non-provided regions at the end. An extension of PositionOrdering to Optional data.

See also

PositionOrdering

Linear Supertypes
OptionalReferenceOrdering[ReferenceRegion], Ordering[Option[ReferenceRegion]], PartialOrdering[Option[ReferenceRegion]], Equiv[Option[ReferenceRegion]], Serializable, Serializable, Comparator[Option[ReferenceRegion]], AnyRef, Any
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Inherited
  1. OptionalRegionOrdering
  2. OptionalReferenceOrdering
  3. Ordering
  4. PartialOrdering
  5. Equiv
  6. Serializable
  7. Serializable
  8. Comparator
  9. AnyRef
  10. Any
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Type Members

  1. class Ops extends AnyRef

    Definition Classes
    Ordering

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. val baseOrdering: RegionOrdering.type

    Definition Classes
    OptionalRegionOrdering → OptionalReferenceOrdering

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. def compare(a: Option[ReferenceRegion], b: Option[ReferenceRegion]): Int

    Definition Classes
    OptionalReferenceOrdering → Ordering → Comparator

  10. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  11. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  12. def equiv(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean

    Definition Classes
    Ordering → PartialOrdering → Equiv

  13. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  14. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  15. def gt(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean

    Definition Classes
    Ordering → PartialOrdering

  16. def gteq(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean

    Definition Classes
    Ordering → PartialOrdering

  17. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  18. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  19. def lt(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean

    Definition Classes
    Ordering → PartialOrdering

  20. def lteq(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Boolean

    Definition Classes
    Ordering → PartialOrdering

  21. def max(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Option[ReferenceRegion]

    Definition Classes
    Ordering

  22. def min(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Option[ReferenceRegion]

    Definition Classes
    Ordering

  23. implicit def mkOrderingOps(lhs: Option[ReferenceRegion]): Ops

    Definition Classes
    Ordering

  24. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  25. final def notify(): Unit

    Definition Classes
    AnyRef

  26. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  27. def on[U](f: (U) ⇒ Option[ReferenceRegion]): Ordering[U]

    Definition Classes
    Ordering

  28. def reverse: Ordering[Option[ReferenceRegion]]

    Definition Classes
    Ordering → PartialOrdering

  29. def reversed(): Comparator[Option[ReferenceRegion]]

    Definition Classes
    Comparator

  30. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  31. def thenComparing[U <: Comparable[_ >: U]](arg0: Function[_ >: Option[ReferenceRegion], _ <: U]): Comparator[Option[ReferenceRegion]]

    Definition Classes
    Comparator

  32. def thenComparing[U](arg0: Function[_ >: Option[ReferenceRegion], _ <: U], arg1: Comparator[_ >: U]): Comparator[Option[ReferenceRegion]]

    Definition Classes
    Comparator

  33. def thenComparing(arg0: Comparator[_ >: Option[ReferenceRegion]]): Comparator[Option[ReferenceRegion]]

    Definition Classes
    Comparator

  34. def thenComparingDouble(arg0: ToDoubleFunction[_ >: Option[ReferenceRegion]]): Comparator[Option[ReferenceRegion]]

    Definition Classes
    Comparator

  35. def thenComparingInt(arg0: ToIntFunction[_ >: Option[ReferenceRegion]]): Comparator[Option[ReferenceRegion]]

    Definition Classes
    Comparator

  36. def thenComparingLong(arg0: ToLongFunction[_ >: Option[ReferenceRegion]]): Comparator[Option[ReferenceRegion]]

    Definition Classes
    Comparator

  37. def toString(): String

    Definition Classes
    AnyRef → Any

  38. def tryCompare(x: Option[ReferenceRegion], y: Option[ReferenceRegion]): Some[Int]

    Definition Classes
    Ordering → PartialOrdering

  39. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  40. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  41. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from OptionalReferenceOrdering[ReferenceRegion]

Inherited from Ordering[Option[ReferenceRegion]]

Inherited from PartialOrdering[Option[ReferenceRegion]]

Inherited from Equiv[Option[ReferenceRegion]]

Inherited from Serializable

Inherited from Serializable

Inherited from Comparator[Option[ReferenceRegion]]

Inherited from AnyRef

Inherited from Any

Ungrouped