org.bdgenomics.adam.rdd

GenomicPositionPartitioner

object GenomicPositionPartitioner extends Serializable

Helper for creating genomic position partitioners.

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  6. def apply(numParts: Int, seqDict: SequenceDictionary): GenomicPositionPartitioner

    Creates a GenomicRegionPartitioner with a specific number of partitions.

    Creates a GenomicRegionPartitioner with a specific number of partitions.

    numParts

    The number of partitions to have in the new partitioner.

    seqDict

    A sequence dictionary describing the known genomic contigs.

    returns

    Returns a partitioner that divides the known genome into a set number of partitions.

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