org.bdgenomics.adam.rdd.read
An OutFormatter that automatically infers whether the piped input is SAM or BAM. Autodetecting streamed CRAM is not currently supported.
Reads alignment records from an input stream.
Reads alignment records from an input stream. Autodetects SAM/BAM format.
An InputStream connected to a process we are piping from.
Returns an iterator of AlignmentRecords read from the stream.
An OutFormatter that automatically infers whether the piped input is SAM or BAM. Autodetecting streamed CRAM is not currently supported.