Class/Object

org.bdgenomics.adam.models

MultiContigNonoverlappingRegions

Related Docs: object MultiContigNonoverlappingRegions | package models

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class MultiContigNonoverlappingRegions extends Serializable

Creates a multi-reference-region collection of NonoverlappingRegions -- see the scaladocs to NonoverlappingRegions.

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Instance Constructors

  1. new MultiContigNonoverlappingRegions(regions: Seq[(String, Iterable[ReferenceRegion])])

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    regions

    A Seq of ReferencRegions, pre-partitioned by their referenceNames. So, for a given pair (x, regs) in this Seq, all regions R in regs must satisfy R.referenceName == x. Furthermore, all the x's must be valid reference names with respect to the sequence dictionary.

Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  6. final def eq(arg0: AnyRef): Boolean

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  7. def equals(arg0: Any): Boolean

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  8. def filter[U](value: (ReferenceRegion, U)): Boolean

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  9. def finalize(): Unit

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  10. final def getClass(): Class[_]

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  11. def hashCode(): Int

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  12. final def isInstanceOf[T0]: Boolean

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  13. final def ne(arg0: AnyRef): Boolean

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  14. final def notify(): Unit

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  15. final def notifyAll(): Unit

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  16. val regionMap: Map[String, NonoverlappingRegions]

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  17. def regionsFor[U](regionable: (ReferenceRegion, U)): Iterable[ReferenceRegion]

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  18. final def synchronized[T0](arg0: ⇒ T0): T0

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  19. def toString(): String

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  20. final def wait(): Unit

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  21. final def wait(arg0: Long, arg1: Int): Unit

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  22. final def wait(arg0: Long): Unit

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